liulab-dfci / TRUST4
TCR and BCR assembly from RNA-seq data
☆302Updated this week
Alternatives and similar repositories for TRUST4:
Users that are interested in TRUST4 are comparing it to the libraries listed below
- Analysis Pipeline for Single Cell ATAC-seq☆317Updated last year
- Single-cell Transcriptome and Regulome Analysis Pipeline☆279Updated 2 years ago
- Analysis of single cell RNA-seq data course☆134Updated 2 years ago
- T/B cell receptor sequencing analysis notes☆248Updated 4 months ago
- Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal☆210Updated 3 months ago
- A tool for detecting somatic variants in single cell data☆198Updated 7 months ago
- ATAC-seq peak-calling and QC analysis pipeline☆200Updated last month
- ☆261Updated 5 months ago
- Application for making ENCODE Blacklists☆299Updated 4 years ago
- SingleR: Single-cell RNA-seq cell types Recognition (legacy version)☆292Updated 4 years ago
- Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)☆281Updated 6 months ago
- ENCODE ATAC-seq pipeline☆411Updated 9 months ago
- Single cell RNA sequencing analysis course☆208Updated 2 weeks ago
- Collections of library structure and sequence of popular single cell genomic methods☆458Updated 4 months ago
- Clustering scRNAseq by genotypes☆178Updated 5 months ago
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆271Updated 2 years ago
- A toolkit for single-cell immune profiling☆330Updated 3 weeks ago
- Cell types enrichment analysis☆194Updated 10 months ago
- Intro to ChIPseq using HPC☆302Updated 2 years ago
- ☆161Updated 7 months ago
- A guide to using a Seurat object in conjunction with RNA Velocity☆138Updated 3 years ago
- ☆230Updated 9 months ago
- Single-cell epigenomics analysis tools☆256Updated last week
- zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs☆279Updated 9 months ago
- EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.☆197Updated last year
- A (continuously updated) collection of references to Hi-C data. Predominantly human/mouse Hi-C data, with replicates.☆189Updated 3 months ago
- Step-by-step analysis pipeline for RNA-seq data☆109Updated last year
- Benchmarking computational single cell ATAC-seq methods☆182Updated 4 years ago
- 📚 Tools and databases for analyzing HLA and VDJ genes.☆219Updated 4 months ago
- Table of software for the analysis of single-cell RNA-seq data.☆319Updated this week