Alternatives and similar repositories for TRUST4:

Users that are interested in TRUST4 are comparing it to the libraries listed below

• r3fang / SnapATAC
  Analysis Pipeline for Single Cell ATAC-seq
  ☆309Updated last year
• liulab-dfci / MAESTRO
  Single-cell Transcriptome and Regulome Analysis Pipeline
  ☆279Updated last year
• crazyhottommy / TCR-BCR-seq-analysis
  T/B cell receptor sequencing analysis notes
  ☆216Updated last month
• broadinstitute / ssGSEA2.0
  Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)
  ☆258Updated 3 months ago
• cortes-ciriano-lab / SComatic
  A tool for detecting somatic variants in single cell data
  ☆182Updated 4 months ago
• loosolab / TOBIAS
  Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal
  ☆205Updated last month
• sdparekh / zUMIs
  zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs
  ☆277Updated 6 months ago
• Teichlab / celltypist
  A tool for semi-automatic cell type classification
  ☆327Updated last month
• nf-core / atacseq
  ATAC-seq peak-calling and QC analysis pipeline
  ☆195Updated last week
• ENCODE-DCC / atac-seq-pipeline
  ENCODE ATAC-seq pipeline
  ☆398Updated 6 months ago
• navinlabcode / copykat
  ☆219Updated 6 months ago
• Boyle-Lab / Blacklist
  Application for making ENCODE Blacklists
  ☆280Updated 3 years ago
• hbctraining / Intro-to-ChIPseq
  Intro to ChIPseq using HPC
  ☆293Updated last year
• IanevskiAleksandr / sc-type
  ☆249Updated 2 months ago
• ncborcherding / scRepertoire
  A toolkit for single-cell immune profiling
  ☆320Updated last week
• hbctraining / Intro-to-ChIPseq-flipped
  ☆85Updated 6 months ago
• kaizhang / SnapATAC2
  Single-cell epigenomics analysis tools
  ☆244Updated 3 weeks ago
• cellgeni / scRNA.seq.course
  Analysis of single cell RNA-seq data course
  ☆125Updated 2 years ago
• broadinstitute / ABC-Enhancer-Gene-Prediction
  Cell type specific enhancer-gene predictions using ABC model (Fulco, Nasser et al, Nature Genetics 2019)
  ☆210Updated this week
• constantAmateur / SoupX
  R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data
  ☆263Updated 2 years ago
• NBISweden / workshop-scRNAseq
  Single cell RNA sequencing analysis course
  ☆200Updated 3 months ago
• dviraran / xCell
  Cell types enrichment analysis
  ☆191Updated 7 months ago
• Teichlab / scg_lib_structs
  Collections of library structure and sequence of popular single cell genomic methods
  ☆443Updated last month
• wheaton5 / souporcell
  Clustering scRNAseq by genotypes
  ☆174Updated 2 months ago
• cellgeni / sceasy
  A package to help convert different single-cell data formats to each other
  ☆398Updated 10 months ago
• slowkow / awesome-vdj
  📚 Tools and databases for analyzing HLA and VDJ genes.
  ☆216Updated last month
• broadinstitute / CellBender
  CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.
  ☆305Updated 6 months ago
• snakemake-workflows / rna-seq-star-deseq2
  RNA-seq workflow using STAR and DESeq2
  ☆332Updated 5 months ago
• basilkhuder / Seurat-to-RNA-Velocity
  A guide to using a Seurat object in conjunction with RNA Velocity
  ☆136Updated 3 years ago
• pinellolab / scATAC-benchmarking
  Benchmarking computational single cell ATAC-seq methods
  ☆179Updated 4 years ago