Alternatives and similar repositories for SCMER:

Users that are interested in SCMER are comparing it to the libraries listed below

• raphael-group / netNMF-sc
  netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data
  ☆22Updated 3 years ago
• brianhie / trajectorama
  Multi-study integration of cellular trajectories
  ☆18Updated 4 years ago
• liulab-dfci / lisa
  epigenome analysis to rank transcription factors
  ☆13Updated 5 years ago
• aristoteleo / Scribe-py
  Regulatory networks with Direct Information in python
  ☆40Updated last year
• jingshuw / SAVERX
  R package for transfer learning of single-cell RNA-seq denoising
  ☆29Updated 2 years ago
• theislab / pseudodynamics
  Dynamic models for single-cell RNA-seq time series.
  ☆39Updated 6 years ago
• const-ae / transformGamPoi-Paper
  ☆26Updated last year
• calico / velodyn
  Dynamical systems methods for RNA velocity analysis
  ☆24Updated 3 years ago
• SydneyBioX / CiteFuse
  CiteFuse:
  ☆27Updated 2 years ago
• khodosevichlab / CellAnnotatoR
  Automated marker-based annotation of cell types
  ☆13Updated 2 years ago
• pachterlab / GFCP_2022
  RNA velocity validation
  ☆23Updated 2 years ago
• Winnie09 / imputationBenchmark
  benchmark for single-cell RNA-seq imputation methods
  ☆25Updated 11 months ago
• quon-titative-biology / scAlign
  A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batch…
  ☆37Updated 3 years ago
• LTLA / scRNAseq
  Clone of the Bioconductor repository for the scRNAseq package.
  ☆24Updated 3 weeks ago
• cole-trapnell-lab / Scribe
  Regulatory networks with Direct Information
  ☆16Updated 5 years ago
• KenLauLab / dropkick
  Automated cell filtering for single-cell RNA sequencing data
  ☆24Updated last year
• lkmklsmn / insct
  scRNAseq integration with triplet neural networks
  ☆40Updated 2 years ago
• cole-trapnell-lab / cicero
  ☆12Updated last year
• bioFAM / slalom
  ☆28Updated 2 years ago
• xzhoulab / DRComparison
  Comparison of dimensionality reduction methods
  ☆30Updated 4 years ago
• churchill-lab / scRATE
  Bayesian model selection to detect zero-inflated genes
  ☆8Updated 4 years ago
• cailab-tamu / scTenifoldNet
  A R/MATLAB package to construct and compare gene regulatory networks from single-cell transcriptomic data
  ☆21Updated last month
• BIMSBbioinfo / netSmooth
  netSmooth: A Network smoothing based method for Single Cell RNA-seq imputation
  ☆27Updated 9 months ago
• architverma1 / tGPLVM
  tGPLVM: A Nonparametric, Generative Model for Manifold Learning with scRNA-seq experimental data
  ☆17Updated 5 years ago
• theislab / mubind
  Learning motif contributions to cell transitions using sequence features and graphs.
  ☆28Updated 5 months ago
• alexQiSong / scSTEM
  Single cell STEM (scSTEM) is a shiny app based R package for visualizing and clustering genes in pseudotime ordered single cell RNA-seq d…
  ☆18Updated 2 years ago
• Katsevich-Lab / sceptre
  An R package for single-cell CRISPR screen data analysis emphasizing statistical rigor, massive scalability, and ease of use.
  ☆26Updated 2 weeks ago
• CHPGenetics / GMM-Demux
  ☆14Updated 11 months ago
• markrobinsonuzh / scRNAseq_clustering_comparison
  A study to compare methods for clustering of scRNA-seq data
  ☆42Updated 6 months ago
• MarioniLab / geneBasisR
  R package for gene selection using k-NN graphs.
  ☆13Updated last year