nspies / svviz2Links
for visual evaluation of read support for structural variation
☆55Updated last year
Alternatives and similar repositories for svviz2
Users that are interested in svviz2 are comparing it to the libraries listed below
Sorting:
- Structural variant merging tool☆55Updated last year
- A tutorial on structural variant calling for short read sequencing data☆38Updated last year
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆23Updated 10 years ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated last year
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆58Updated 8 years ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆48Updated 5 years ago
- ☆51Updated 6 years ago
- Long-read Isoform Quantification and Analysis☆38Updated 7 months ago
- Long-read splice alignment with high accuracy☆63Updated last year
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆51Updated 5 years ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆41Updated last month
- Structural variant VCF annotation, duplicate removal and comparison☆34Updated 2 weeks ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆64Updated last year
- Gene Fusion Visualiser☆51Updated 2 years ago
- LongcallR is a SNP caller for single molecule long-read RNA-seq data☆67Updated last month
- Structural Variant Prediction Viewer☆35Updated 8 years ago
- ☆38Updated 2 years ago
- Tools for processing and analyzing structural variants.☆33Updated 10 years ago
- ☆36Updated last year
- a hidden Markov model to infer simple repeats from genome sequences☆37Updated 4 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆67Updated 2 years ago
- Simple utility to concatenate .fastq(.gz) files whilst creating a summary of the sequences.☆48Updated last month
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 5 years ago
- Structural variant caller☆55Updated 3 years ago
- python plotly Circos from VCF☆40Updated last year
- Long read to rMATS☆32Updated 2 years ago
- heuristics to merge structural variant calls in VCF format.☆38Updated 9 years ago
- A tool for genotyping Variable Number Tandem Repeats (VNTR) from sequence data☆47Updated 10 months ago
- TIDDIT - structural variant calling☆77Updated 6 months ago
- A software for calculating telomere length☆72Updated 7 years ago