vanallenlab / MutPanningV2Links
This repository contains the source code of the revised version of MutPanning. MutPanning is publicly available under the BSD3-Clause open source license.
☆12Updated 5 years ago
Alternatives and similar repositories for MutPanningV2
Users that are interested in MutPanningV2 are comparing it to the libraries listed below
Sorting:
- R package specialized in HLA typing clustering and visualization based on specific similarity metrics☆12Updated 5 years ago
- Comprehensive Human Expressed SequenceS☆18Updated 3 weeks ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- Accompanying analysis code for the FRASER manuscript☆26Updated 4 years ago
- Code to run OncoSig Analyses☆18Updated 4 years ago
- Texomer: Integrating Analysis of Cancer Genome and Transcriptome Sequencing Data☆21Updated 4 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- Repo that aids in the detection of microsatellite instabilities (MSI) from sequencing data☆20Updated last year
- BANDITS: Bayesian ANalysis of DIfferenTial Splicing☆18Updated last year
- This is the BWA workflow used in the PanCancer project used to allign all the BAM files.☆11Updated 2 years ago
- Detecting somatic mutations and predicting tumor-specific neo-antigens☆29Updated 3 years ago
- Singularity port of HLA typing based on an input exome BAM file and is currently infers infers alleles for the three major MHC class I (…☆13Updated 8 years ago
- Toolkit for benchmarking fusion transcript predictions☆19Updated 11 months ago
- Smooth-quantile Normalization Adaptation for Inference of co-expression Links☆16Updated 2 years ago
- ☆22Updated 6 months ago
- Search for activating regulatory variants in the tumor genome☆14Updated 3 months ago
- Workflow for Sequenza, cellularity and ploidy☆19Updated last week
- Published at Bioinformatics☆12Updated last year
- This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…☆16Updated last year
- ☆10Updated 5 years ago
- scpca-nf is the Nextflow workflow for processing Single-cell Pediatric Cancer Atlas Portal data☆14Updated this week
- ☆14Updated last year
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆18Updated 2 weeks ago
- ☆11Updated 7 years ago
- NeoFuse is a user-friendly pipeline for the prediction of fusion neoantigens from tumor RNA-seq data.☆19Updated 2 years ago
- The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, cl…☆14Updated 6 years ago
- Reconstructs complex variation using Bionano optical mapping data and breakpoint graph data☆18Updated last year
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆37Updated last year
- DriverPower☆26Updated 6 months ago
- Model-based subclonal deconvolution from bulk sequencing.☆33Updated 7 months ago