parklab / SigMALinks
Mutational signature analysis for low statistics SNV data
☆64Updated last year
Alternatives and similar repositories for SigMA
Users that are interested in SigMA are comparing it to the libraries listed below
Sorting:
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆72Updated last year
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 6 years ago
- An R package to time somatic mutations☆65Updated 5 years ago
- Main repository for Drews et al. (Nature, 2022)☆42Updated 2 years ago
- ☆75Updated 2 years ago
- ☆36Updated 6 years ago
- R package containing useful functions for mutational signature analysis☆86Updated last week
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆42Updated 5 years ago
- Filters for false-positive mutation calls in NGS☆34Updated 6 years ago
- RNA-seq Quantification of Alternative Polyadenylation☆50Updated 6 months ago
- Somatic copy variant caller (CNV) for next generation sequencing☆75Updated last year
- An R package for predicting HR deficiency from mutation contexts☆30Updated 11 months ago
- Somatic copy number analysis using WGS paired end wholegenome sequencing☆71Updated 5 years ago
- ☆13Updated 8 years ago
- ☆38Updated 5 years ago
- Filtering of PDX samples for mouse derived reads☆28Updated 3 weeks ago
- Battenberg algorithm and associated implementation script☆53Updated 5 years ago
- Battenberg R package for subclonal copynumber estimation☆95Updated 2 months ago
- ☆83Updated 9 months ago
- ☆44Updated 7 years ago
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆32Updated 2 years ago
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post…☆27Updated 3 months ago
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆67Updated 5 years ago
- DCC/DAC methylation pipeline source☆57Updated 5 years ago
- nextNEOpi: a comprehensive pipeline for computational neoantigen prediction☆83Updated 8 months ago
- Genomic Identification of Significant Targets in Cancer (GISTIC), version 2☆53Updated 3 years ago
- This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…☆62Updated 5 years ago
- RNA editing tests☆17Updated 5 years ago
- GLASS consortium☆42Updated 5 years ago
- Comprehensive genome-wide visualization of absolute copy number and copy neutral variations☆29Updated 6 years ago