hdng / clonevolLinks
Inferring and visualizing clonal evolution in multi-sample cancer sequencing
☆147Updated 5 years ago
Alternatives and similar repositories for clonevol
Users that are interested in clonevol are comparing it to the libraries listed below
Sorting:
- Create timecourse "fish plots" that show changes in the clonal architecture of tumors☆171Updated 2 years ago
- An R package for inferring the subclonal architecture of tumors☆122Updated 2 years ago
- nucleosome calling using ATAC-seq☆108Updated 4 years ago
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆98Updated 4 years ago
- deconstructSigs☆143Updated 2 years ago
- Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.☆154Updated 2 years ago
- ☆116Updated 2 years ago
- STAR based ENCODE Long RNA-Seq processing pipeline☆95Updated 4 years ago
- A tool for bigWig files.☆119Updated 7 years ago
- Tools for processing UMI RNA-tag data☆131Updated 2 years ago
- HMMRATAC peak caller for ATAC-seq data☆99Updated 11 months ago
- Pipeline for processing inDrops sequencing data☆76Updated 7 years ago
- ☆120Updated 2 years ago
- a snakemake pipeline to process ChIP-seq files from GEO or in-house☆110Updated 5 years ago
- ☆78Updated 6 months ago
- This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…☆60Updated 5 years ago
- WASP: allele-specific pipeline for unbiased read mapping and molecular QTL discovery☆107Updated 4 years ago
- Somatic copy number analysis using WGS paired end wholegenome sequencing☆72Updated 4 years ago
- Software program for checking sample matching for NGS data☆137Updated last year
- Battenberg algorithm and associated implementation script☆53Updated 5 years ago
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆75Updated 2 years ago
- A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.☆103Updated 2 years ago
- microRNA profiling pipeline☆79Updated 3 years ago
- ☆72Updated 2 years ago
- Transcript quantification import for modular pipelines☆141Updated 3 weeks ago
- A modular, containerized pipeline for ATAC-seq data processing☆60Updated last month
- A factor analysis package☆102Updated 13 years ago
- A toolkit for QC and visualization of ATAC-seq results.☆71Updated 9 months ago
- A toolset for profiling alternative splicing events in RNA-Seq data.☆82Updated 9 months ago
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆118Updated 3 weeks ago