koelling / amplimapLinks
amplicon/smMIP mapping and analysis pipeline
☆11Updated 3 years ago
Alternatives and similar repositories for amplimap
Users that are interested in amplimap are comparing it to the libraries listed below
Sorting:
- Clinical Variant Annotation Pipeline☆10Updated 5 years ago
- R package specialized in HLA typing clustering and visualization based on specific similarity metrics☆14Updated 6 years ago
- ☆13Updated 2 years ago
- This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…☆18Updated 2 years ago
- Pipeline for generating RNAseq-based cancer patient reports☆11Updated this week
- CLI to automate Nextflow pipeline testing☆12Updated last month
- BANDITS: Bayesian ANalysis of DIfferenTial Splicing☆19Updated 4 months ago
- ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.☆21Updated 4 years ago
- Kinship In Mixed Model Analysis of RNA-seq☆13Updated 9 months ago
- Bedfile perturbation tool☆17Updated 4 months ago
- dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCF…☆11Updated 5 years ago
- RNA-seq for Mendelian disease diagnostics: A hands-on tutorial through bioinformatic tools and workflows☆17Updated 3 years ago
- Machine learning use cases for teaching☆13Updated 8 years ago
- Filter and prioritize fusion calls☆20Updated 2 weeks ago
- R package to organise and standardise your genomic variant calls obtained with different callers.☆11Updated 6 years ago
- This is the GPress, a framework for querying GTF, GFF3 and expression files in a compressed form.☆12Updated 2 years ago
- Generate HTML report for a set of genomic regions or DESeq2/edgeR results☆10Updated last year
- The official repository for the deepSNV bioconductor packages. Branch master tracks the official Bioconductor development branch.☆17Updated 3 years ago
- Building the constrained coding regions (CCR) model☆16Updated 7 years ago
- Repository for RecallME-v.0.1 a variant calling pipelines benchmarker and optimizer☆13Updated 2 years ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 5 years ago
- R Interface to the NCBI SRA metadata☆23Updated 7 years ago
- TOP results by CONfident efFECT Sizes.☆15Updated last year
- An alignment and analysis pipeline for Ribosome Profiling and RNA-seq data☆13Updated last year
- Ultra Fast NGS Data QC Tool☆28Updated 4 years ago
- R package for visualizing complex and multi-track 1D and 2D genomic data in GenomicRanges framework☆17Updated last year
- R package to quickly obtain count vectors from indexed bam files☆15Updated 7 months ago
- Improved multi-sample transcript abundance estimates using adaptive priors☆20Updated 7 years ago
- ☆14Updated 2 years ago
- R interface to megadepth: BigWig and BAM related utilities☆12Updated last year