koelling / amplimapLinks
amplicon/smMIP mapping and analysis pipeline
☆11Updated 2 years ago
Alternatives and similar repositories for amplimap
Users that are interested in amplimap are comparing it to the libraries listed below
Sorting:
- Clinical Variant Annotation Pipeline☆10Updated 5 years ago
- This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…☆18Updated last year
- CLI to automate Nextflow pipeline testing☆12Updated 3 weeks ago
- R package specialized in HLA typing clustering and visualization based on specific similarity metrics☆14Updated 5 years ago
- ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.☆21Updated 4 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated 2 weeks ago
- dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCF…☆11Updated 4 years ago
- Kinship In Mixed Model Analysis of RNA-seq☆13Updated 7 months ago
- BANDITS: Bayesian ANalysis of DIfferenTial Splicing☆18Updated last month
- R package for visualizing complex and multi-track 1D and 2D genomic data in GenomicRanges framework☆17Updated 10 months ago
- Filter and prioritize fusion calls☆20Updated last year
- R package to organise and standardise your genomic variant calls obtained with different callers.☆11Updated 6 years ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 4 years ago
- Bedfile perturbation tool☆17Updated last month
- Mostly deprecated in favor of : https://github.com/hbc/bcbioRNASeq. Quality control, differential gene/transcript expression and pathway …☆24Updated 7 years ago
- End-guided RNA assembler☆15Updated 2 weeks ago
- ☆13Updated 2 years ago
- The official repository for the deepSNV bioconductor packages. Branch master tracks the official Bioconductor development branch.☆17Updated 3 years ago
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆18Updated 6 years ago
- Detects human contamination in bam files☆16Updated 5 years ago
- Machine learning use cases for teaching☆13Updated 8 years ago
- iAnnotateSV is a Python library and command-line software toolkit to annotate and visualize structural variants detected from Next Genera…☆16Updated 2 months ago
- Mapping-free software for fishing relevant reads in an RNA-Seq sample☆19Updated 4 years ago
- Building the constrained coding regions (CCR) model☆16Updated 6 years ago
- TOP results by CONfident efFECT Sizes.☆14Updated 11 months ago
- ☆22Updated 9 months ago
- a Shiny/R application to view and annotate copy number variations☆28Updated 2 years ago
- Whole genome workflows☆12Updated last year
- Nextflow implementation of the GATK HaplotypeCaller pipeline☆13Updated 4 months ago
- Smooth-quantile Normalization Adaptation for Inference of co-expression Links☆16Updated 2 years ago