Alternatives and similar repositories for amplimap

Users that are interested in amplimap are comparing it to the libraries listed below

• PersonalizedOncology / ClinVAP
  Clinical Variant Annotation Pipeline
  ☆10Updated 5 years ago
• beroukhim-lab / ascets
  This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…
  ☆16Updated last year
• NCBI-Hackathons / HLAClustRView
  R package specialized in HLA typing clustering and visualization based on specific similarity metrics
  ☆13Updated 5 years ago
• Shamir-Lab / PRODIGY
  Personalized prioritization of driver genes in cancer
  ☆9Updated 3 years ago
• SimoneTiberi / BANDITS
  BANDITS: Bayesian ANalysis of DIfferenTial Splicing
  ☆18Updated last year
• d3b-center / annoFuse
  Filter and prioritize fusion calls
  ☆20Updated 10 months ago
• ProSolo / prosolo
  ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.
  ☆22Updated 3 years ago
• databio / bedshift
  Bedfile perturbation tool
  ☆17Updated last year
• uclahs-cds / tool-NFTest
  CLI to automate Nextflow pipeline testing
  ☆12Updated last month
• Gregor-Mendel-Institute / bookend
  End-guided RNA assembler
  ☆15Updated 3 weeks ago
• VCCRI / dv-trio
  dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCF…
  ☆11Updated 4 years ago
• gagneurlab / RNAseq-ASHG
  RNA-seq for Mendelian disease diagnostics: A hands-on tutorial through bioinformatic tools and workflows
  ☆17Updated 3 years ago
• BIGslu / kimma
  Kinship In Mixed Model Analysis of RNA-seq
  ☆13Updated 3 months ago
• yuansliu / minirmd
  ☆12Updated 2 years ago
• FischerJo / FAME
  ☆14Updated 2 years ago
• ImperialCardioGenetics / frequencyFilter
  Allele frequency filtering for Mendelian variant discovery
  ☆18Updated 8 years ago
• qm2 / gpress
  This is the GPress, a framework for querying GTF, GFF3 and expression files in a compressed form.
  ☆12Updated last year
• sigven / cacao
  Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer
  ☆21Updated 4 years ago
• kuijjerlab / PySNAIL
  Smooth-quantile Normalization Adaptation for Inference of co-expression Links
  ☆16Updated 2 years ago
• hlilab / hlilab.github.io
  ☆16Updated last month
• leekgroup / regionReport
  Generate HTML report for a set of genomic regions or DESeq2/edgeR results
  ☆10Updated 6 months ago
• XPRESSyourself / XPRESSpipe
  An alignment and analysis pipeline for Ribosome Profiling and RNA-seq data
  ☆13Updated last year
• sigven / pharmOncoX
  Targeted and non-targeted anticancer drugs and drug regimens
  ☆29Updated last month
• nygenome / Lancet2
  v2.x of the microassembly based somatic variant caller
  ☆24Updated 3 weeks ago
• ma-compbio / Weaver
  Allele-Specific Quantification of Structural Variations in Cancer Genomes
  ☆18Updated 6 years ago
• statgen / fivex
  Interactive eQTL visualizations
  ☆13Updated 2 years ago
• gui11aume / mmp
  MEM mapper prototype
  ☆13Updated 4 years ago
• ssadedin / ximmer
  Ximmer is a system for CNV calling on exome and targeted genomic sequencing
  ☆19Updated 5 months ago
• czhu / FulQuant
  FulQuant pipeline to identify and quantify transcript isoforms based on Nanopore long-read data
  ☆9Updated 3 years ago
• seandavi / SRAdbV2
  R Interface to the NCBI SRA metadata
  ☆23Updated 6 years ago