koelling / amplimapLinks
amplicon/smMIP mapping and analysis pipeline
☆11Updated 2 years ago
Alternatives and similar repositories for amplimap
Users that are interested in amplimap are comparing it to the libraries listed below
Sorting:
- Clinical Variant Annotation Pipeline☆10Updated 5 years ago
- This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…☆16Updated last year
- Personalized prioritization of driver genes in cancer☆9Updated 3 years ago
- R package specialized in HLA typing clustering and visualization based on specific similarity metrics☆12Updated 5 years ago
- dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCF…☆11Updated 4 years ago
- Filter and prioritize fusion calls☆20Updated 9 months ago
- CLI to automate Nextflow pipeline testing☆12Updated 2 weeks ago
- Generate HTML report for a set of genomic regions or DESeq2/edgeR results☆10Updated 6 months ago
- R package for visualizing complex and multi-track 1D and 2D genomic data in GenomicRanges framework☆17Updated 6 months ago
- R package to organise and standardise your genomic variant calls obtained with different callers.☆11Updated 6 years ago
- ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.☆22Updated 3 years ago
- BANDITS: Bayesian ANalysis of DIfferenTial Splicing☆18Updated last year
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 5 years ago
- Correctly counting molecules using unique molecular identifiers (UMIs)☆9Updated 3 years ago
- This is the GPress, a framework for querying GTF, GFF3 and expression files in a compressed form.☆12Updated last year
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆18Updated 6 years ago
- Kinship In Mixed Model Analysis of RNA-seq☆13Updated 3 months ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated 5 months ago
- analysis pipeline for CODEC data☆11Updated last month
- Bedfile perturbation tool☆17Updated last year
- End-guided RNA assembler☆15Updated 3 months ago
- ☆12Updated 2 years ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 4 years ago
- iAnnotateSV is a Python library and command-line software toolkit to annotate and visualize structural variants detected from Next Genera…☆16Updated 3 months ago
- Prioritizing Copy Number Variants (CNV) using Phenotype and Gene Functional Similarity☆16Updated 3 years ago
- a Shiny/R application to view and annotate copy number variations☆28Updated 2 years ago
- ☆15Updated last month
- Repository for RecallME-v.0.1 a variant calling pipelines benchmarker and optimizer☆13Updated last year
- Toolkit for calling and analyzing de novo STR mutations☆14Updated last year
- RNA-seq for Mendelian disease diagnostics: A hands-on tutorial through bioinformatic tools and workflows☆17Updated 3 years ago