ICGC-TCGA-PanCancer / Seqware-BWA-WorkflowLinks
This is the BWA workflow used in the PanCancer project used to allign all the BAM files.
☆11Updated 2 years ago
Alternatives and similar repositories for Seqware-BWA-Workflow
Users that are interested in Seqware-BWA-Workflow are comparing it to the libraries listed below
Sorting:
- This repository contains the source code of the revised version of MutPanning. MutPanning is publicly available under the BSD3-Clause ope…☆12Updated 5 years ago
- Comprehensive Human Expressed SequenceS☆17Updated last week
- Smooth-quantile Normalization Adaptation for Inference of co-expression Links☆16Updated 2 years ago
- The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, cl…☆13Updated 6 years ago
- ☆12Updated last year
- This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…☆16Updated last year
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- Interactive eQTL visualizations☆13Updated 2 years ago
- R package specialized in HLA typing clustering and visualization based on specific similarity metrics☆12Updated 5 years ago
- BANDITS: Bayesian ANalysis of DIfferenTial Splicing☆18Updated last year
- The `multiGSEA` R package was designed to run a robust GSEA-based pathway enrichment for multiple omics layers.☆19Updated 2 months ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- TFregulomeR reveals transcription factors’ context-specific features and functions☆16Updated 3 years ago
- Code and files accompanying article "The landscape of somatic mutation in normal colorectal epithelial cells"☆11Updated 4 years ago
- Personalized prioritization of driver genes in cancer☆9Updated 3 years ago
- The EnsembleVariantCallingPipeline takes files in FASTQ or BAM format and performs SNV and INDEL variant calling from 4 variant callers (…☆13Updated 2 years ago
- Reconstructs complex variation using Bionano optical mapping data and breakpoint graph data☆18Updated last year
- Build single sample pair-based (rule-based) classifiers using top-score pairs or random forest for multi-class problems.☆12Updated 2 years ago
- NeoFuse is a user-friendly pipeline for the prediction of fusion neoantigens from tumor RNA-seq data.☆19Updated 2 years ago
- single-cell analysis workflows for double phosphoramidite barcode and UMI Correction (scCOLOR-seq)☆13Updated 2 years ago
- ☆22Updated 2 months ago
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆31Updated 4 years ago
- Dockerised and simplified version of SeqWare-CGP-SomaticCore☆14Updated 4 years ago
- Integrated workflow for SV calling from single-cell Strand-seq data☆22Updated 4 months ago
- ☆11Updated 6 years ago
- Building the constrained coding regions (CCR) model☆16Updated 6 years ago
- Mutational Signature Comprehensive Analysis Toolkit☆13Updated this week
- cfDNA analysis workflow☆21Updated 2 years ago
- Perturb-seq analysis package☆14Updated last year
- Machine learning use cases for teaching☆13Updated 8 years ago