This is the BWA workflow used in the PanCancer project used to allign all the BAM files.
☆11Dec 27, 2022Updated 3 years ago
Alternatives and similar repositories for Seqware-BWA-Workflow
Users that are interested in Seqware-BWA-Workflow are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Dockerised and simplified version of SeqWare-CGP-SomaticCore☆14Mar 5, 2021Updated 5 years ago
- Pathway-Level Single-Cell Functional Profiling of Individual Patient Samples☆11Aug 6, 2025Updated last year
- Bayesian mixture models for estimating and clustering cancer cell fractions☆26Dec 20, 2022Updated 3 years ago
- Modeling Spatio-temporal Dynamics of Chromatin Marks☆12Aug 2, 2021Updated 5 years ago
- Figure depicting the breadth of multimodal scRNA-seq technologies☆16Apr 3, 2019Updated 7 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Helpers for working with ChromHMM (http://compbio.mit.edu/ChromHMM/)☆18Feb 26, 2018Updated 8 years ago
- ☆11Jun 22, 2026Updated 4 months ago
- SMILE: Mutual Information Learning for Integration of Single Cell Omics Data☆11Mar 28, 2023Updated 3 years ago
- 🛜 A lightweight immune repertoire browser☆28Dec 10, 2019Updated 6 years ago
- ☆10Aug 31, 2025Updated last year
- Code for reproducing results from the paper "RNA velocity and protein acceleration from single-cell multiomics experiments."☆11Feb 1, 2020Updated 6 years ago
- ☆11May 15, 2025Updated last year
- Tool for Motif Deconvolution in large HLA-II ligand datasets without the need of prior alignment.☆15Feb 17, 2025Updated last year
- ☆10May 31, 2022Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- WDL pipelines for running regenie☆12Oct 9, 2026Updated 3 weeks ago
- ☆13Oct 15, 2026Updated 2 weeks ago
- Pipeline for analyzing rare mutations in metagenome-assembled genomes☆10Apr 4, 2025Updated last year
- This repository contains the source code of the revised version of MutPanning. MutPanning is publicly available under the BSD3-Clause ope…☆14Nov 12, 2019Updated 6 years ago
- Helpful handful of programs, completely open-source and free☆11Mar 26, 2021Updated 5 years ago
- ☆10Jul 19, 2024Updated 2 years ago
- ☆18Sep 6, 2022Updated 4 years ago
- Repository containing the code to reproduce the analyses contained in the MEFISTO manuscript☆13Jul 27, 2021Updated 5 years ago
- GREAT algorithm in Python☆17Oct 24, 2022Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- The scripts used for the analyses in TOME project☆26Nov 28, 2025Updated 11 months ago
- TESLA implementation (part of rareGWAMA)☆10Nov 23, 2022Updated 3 years ago
- qtools has helper functions to submit jobs to compute clusters (PBS on TSCC, SGE on oolite) from within Python☆21Sep 20, 2023Updated 3 years ago
- Detect key Units in mosaic Tandem Repeats from representative reads from the same locus☆10Aug 2, 2023Updated 3 years ago
- TCR Reconstruction Algorithm for Paired-End Single cell☆14Oct 13, 2019Updated 7 years ago
- ☆17Updated this week
- Negative binomial regression for Spatial Transcriptomics data as described in Maaskola et al. 2018☆22Nov 2, 2018Updated 7 years ago
- The million-scale method for single-cell analysis☆10Jul 6, 2023Updated 3 years ago
- Utilities repository to analyze single-cell data from https://www.nature.com/articles/s41467-018-07261-3.☆10Feb 7, 2020Updated 6 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.☆11Aug 11, 2026Updated 2 months ago
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆39Nov 27, 2024Updated last year
- Software to process, statistically analyse and visualise deep mutational scanning data☆14Aug 3, 2026Updated 2 months ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆34Feb 18, 2026Updated 8 months ago
- Determine the biological sex of a human whole-genome BAM file☆16Feb 10, 2019Updated 7 years ago
- Importing vg json graphs to Python data structures.☆12Nov 11, 2020Updated 5 years ago
- mapping somatic variants to cell barcodes in scRNA-Seq data☆11Sep 21, 2026Updated last month