This is the BWA workflow used in the PanCancer project used to allign all the BAM files.
☆11Dec 27, 2022Updated 3 years ago
Alternatives and similar repositories for Seqware-BWA-Workflow
Users that are interested in Seqware-BWA-Workflow are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Dockerised and simplified version of SeqWare-CGP-SomaticCore☆14Mar 5, 2021Updated 5 years ago
- Modeling Spatio-temporal Dynamics of Chromatin Marks☆12Aug 2, 2021Updated 4 years ago
- Bayesian mixture models for estimating and clustering cancer cell fractions☆24Dec 20, 2022Updated 3 years ago
- Helpers for working with ChromHMM (http://compbio.mit.edu/ChromHMM/)☆17Feb 26, 2018Updated 8 years ago
- Tool for Motif Deconvolution in large HLA-II ligand datasets without the need of prior alignment.☆15Feb 17, 2025Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Automated processing of Sanger sequencing data, taxonomic profiling, and generation of microbial strain libraries☆12Jan 4, 2026Updated 3 months ago
- Pipeline for analyzing rare mutations in metagenome-assembled genomes☆10Apr 4, 2025Updated last year
- This repository contains the source code of the revised version of MutPanning. MutPanning is publicly available under the BSD3-Clause ope…☆13Nov 12, 2019Updated 6 years ago
- 🛜 A lightweight immune repertoire browser☆27Dec 10, 2019Updated 6 years ago
- Code for reproducing results from the paper "RNA velocity and protein acceleration from single-cell multiomics experiments."☆11Feb 1, 2020Updated 6 years ago
- ☆10May 31, 2022Updated 3 years ago
- ☆18Sep 6, 2022Updated 3 years ago
- Helpful handful of programs, completely open-source and free☆11Mar 26, 2021Updated 5 years ago
- Detect key Units in mosaic Tandem Repeats from representative reads from the same locus☆10Aug 2, 2023Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- The scripts used for the analyses in TOME project☆24Nov 28, 2025Updated 5 months ago
- SMILE: Mutual Information Learning for Integration of Single Cell Omics Data☆11Mar 28, 2023Updated 3 years ago
- Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.☆11Jul 8, 2025Updated 9 months ago
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆37Nov 27, 2024Updated last year
- Negative binomial regression for Spatial Transcriptomics data as described in Maaskola et al. 2018☆22Nov 2, 2018Updated 7 years ago
- qtools has helper functions to submit jobs to compute clusters (PBS on TSCC, SGE on oolite) from within Python☆21Sep 20, 2023Updated 2 years ago
- TCR Reconstruction Algorithm for Paired-End Single cell☆14Oct 13, 2019Updated 6 years ago
- Software to process, statistically analyse and visualise deep mutational scanning data☆14Updated this week
- The million-scale method for single-cell analysis☆10Jul 6, 2023Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Tools for bam file processing☆56Apr 20, 2015Updated 11 years ago
- Whole genome workflows☆13Nov 9, 2024Updated last year
- Important papers relating to the biology of cell free DNA☆19Sep 21, 2018Updated 7 years ago
- Transposable element expression at unique loci in single cells with CELLO-seq☆11Jun 17, 2024Updated last year
- DNAscan2 is a fast and efficient bioinformatics pipeline that allows for the analysis of DNA Next Generation sequencing data, requiring v…☆14May 7, 2024Updated last year
- Importing vg json graphs to Python data structures.☆12Nov 11, 2020Updated 5 years ago
- SARS-CoV-2 Deep Sequencing☆14Apr 22, 2020Updated 6 years ago
- ☆17Mar 17, 2026Updated last month
- Repository detailing updated allowlisting and clonal analysis workflow☆10Feb 1, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, cl…☆15Feb 27, 2019Updated 7 years ago
- Figure depicting the breadth of multimodal scRNA-seq technologies☆16Apr 3, 2019Updated 7 years ago
- R package specialized in HLA typing clustering and visualization based on specific similarity metrics☆14Nov 21, 2019Updated 6 years ago
- Summary statistics for repertoires☆17Feb 1, 2023Updated 3 years ago
- HLA-II ligand predictor.☆45Apr 6, 2023Updated 3 years ago
- reComBat package to correct batch effects☆13Jul 17, 2023Updated 2 years ago
- Integrated Genome Modeling (IGM): multi-modal data-driven simulator of genome structures☆12Jun 15, 2023Updated 2 years ago