parklab / MSIprofilerLinks
Repo that aids in the detection of microsatellite instabilities (MSI) from sequencing data
☆20Updated last year
Alternatives and similar repositories for MSIprofiler
Users that are interested in MSIprofiler are comparing it to the libraries listed below
Sorting:
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 7 years ago
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆21Updated 3 years ago
- This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…☆18Updated last year
- mitochondrial variant analysis tools☆15Updated 4 years ago
- DriverPower☆26Updated 10 months ago
- Singularity port of HLA typing based on an input exome BAM file and is currently infers infers alleles for the three major MHC class I (…☆14Updated 8 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- Texomer: Integrating Analysis of Cancer Genome and Transcriptome Sequencing Data☆21Updated 5 years ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆30Updated 8 months ago
- Codes and Data for FFPEsig manuscript☆17Updated last year
- Advanced plotting functions for CNV data generated by CNV-Seq and Control Freec☆13Updated 5 years ago
- Fork of https://bitbucket.org/mcgranahanlab/lohhla☆18Updated 5 years ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆41Updated last year
- Clonal and subclonal Copy Number Alteration quality check integrating somatic mutation☆24Updated 2 months ago
- Model-based tumour subclonal deconvolution using population genetics☆33Updated last week
- ☆14Updated 6 months ago
- Workflow for Sequenza, cellularity and ploidy☆25Updated 3 months ago
- Reconstructs complex variation using Bionano optical mapping data and breakpoint graph data☆19Updated 2 years ago
- ☆18Updated 4 years ago
- Repo for generating custom blacklist for reads originating from mitochondrial DNA to nuclear genome☆22Updated 3 years ago
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆19Updated last week
- ASCETIC (Agony-baSed Cancer EvoluTion InferenCe) is a novel framework for the inference of a set of statistically significant temporal pa…☆12Updated 7 months ago
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆40Updated 3 years ago
- ☆17Updated last year
- Detecting somatic mutations and predicting tumor-specific neo-antigens☆29Updated 4 years ago
- A tool kit for dissecting cancer evolution from multi-region derived tumor biopsies via somatic mutations☆35Updated 3 years ago
- Filter and prioritize fusion calls☆20Updated last year
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆31Updated 2 years ago
- Algorithm for detecting alternative splicing in a population of single cells. See details in Welch et al., Nucleic Acids Research 2016: h…☆23Updated 9 years ago
- Differential ATAC-seq toolkit☆27Updated last year