parklab / MSIprofiler
Repo that aids in the detection of microsatellite instabilities (MSI) from sequencing data
☆20Updated 8 months ago
Alternatives and similar repositories for MSIprofiler:
Users that are interested in MSIprofiler are comparing it to the libraries listed below
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆20Updated 3 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 3 years ago
- Somatic coding and non-coding mutation enrichment analysis for tumor WGS data☆10Updated 3 years ago
- NeoFuse is a user-friendly pipeline for the prediction of fusion neoantigens from tumor RNA-seq data.☆18Updated 2 years ago
- Workflow for Sequenza, cellularity and ploidy☆19Updated 6 months ago
- Fork of https://bitbucket.org/mcgranahanlab/lohhla☆16Updated 4 years ago
- Advanced plotting functions for CNV data generated by CNV-Seq and Control Freec☆13Updated 4 years ago
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆21Updated last year
- Algorithm for detecting alternative splicing in a population of single cells. See details in Welch et al., Nucleic Acids Research 2016: h…☆21Updated 8 years ago
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆38Updated 2 years ago
- ☆23Updated 3 years ago
- Model-based subclonal deconvolution from bulk sequencing.☆33Updated 2 weeks ago
- ☆19Updated 3 years ago
- iread☆23Updated 3 years ago
- R package to analyze aberrant splicing junctions in tumor samples to identify neoepitopes☆13Updated 2 months ago
- Differential ATAC-seq toolkit☆27Updated last year
- DriverPower☆26Updated this week
- Isoform co-usage networks from single-cell RNA-seq data☆15Updated 10 months ago
- Comprehensive genome-wide visualization of absolute copy number and copy neutral variations☆28Updated 5 years ago
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆17Updated 2 months ago
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆16Updated 5 years ago
- a parallel R package for detecting copy-number alterations from short sequencing reads☆23Updated 3 years ago
- Main repository for Drews et al. (Nature, 2022)☆39Updated last year
- Texomer: Integrating Analysis of Cancer Genome and Transcriptome Sequencing Data☆20Updated 4 years ago
- Filter and prioritize fusion calls☆20Updated 3 months ago
- Package for calculation of Homologous Recombination Deficiency☆13Updated 4 years ago
- Scripts used for the ACT paper☆12Updated 3 years ago
- CNV analysis workflow code for the manuscript☆13Updated 4 years ago
- A flexible framework to annotate and prioritize cancer somatic mutations.☆8Updated 7 years ago