VanLoo-lab / ascatLinks
ASCAT R package
☆181Updated 3 months ago
Alternatives and similar repositories for ascat
Users that are interested in ascat are comparing it to the libraries listed below
Sorting:
- SEACR: Sparse Enrichment Analysis for CUT&RUN☆110Updated 2 years ago
- Microsatellite instability (MSI) detection for tumor only data.☆106Updated last year
- Finder of Somatic Fusion Genes in RNA-seq data☆146Updated 2 years ago
- Detecting sites of genomic enrichment☆192Updated 2 years ago
- Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.☆185Updated last year
- ☆116Updated last year
- ☆138Updated 6 years ago
- Script to automatically create and run IGV snapshot batchscripts☆141Updated 2 years ago
- STAR based ENCODE Long RNA-Seq processing pipeline☆94Updated 4 years ago
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆227Updated this week
- A short tutorial on how to use RSEM☆136Updated 5 years ago
- ATAC-seq peak-calling and QC analysis pipeline☆205Updated 3 weeks ago
- Copy number calling and variant classification using targeted short read sequencing☆135Updated last month
- ENCODE Uniform processing pipeline for ChIP-seq☆123Updated 5 years ago
- deconstructSigs☆141Updated 2 years ago
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆160Updated 2 years ago
- ☆73Updated 2 months ago
- A package for including transposable elements in differential enrichment analysis of sequencing datasets.☆252Updated 4 months ago
- WGBS/NOMe-seq Data Processing & Differential Methylation Analysis☆143Updated 2 years ago
- Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae …☆219Updated last year
- Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.☆149Updated 2 years ago
- tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies☆161Updated last month
- Fast and accurate gene fusion detection from RNA-Seq data☆242Updated 2 months ago
- Fast alignment and preprocessing of chromatin profiles☆202Updated last week
- Check strandedness of RNA-Seq fastq files☆124Updated 2 years ago
- Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel☆168Updated last week
- ☆117Updated last year
- Analysis pipeline for CUT&RUN and CUT&TAG experiments that includes QC, support for spike-ins, IgG controls, peak calling and downstream …☆92Updated 3 weeks ago
- ☆147Updated last month
- ☆151Updated 2 years ago