ASCAT R package
☆199Feb 12, 2026Updated last month
Alternatives and similar repositories for ascat
Users that are interested in ascat are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Battenberg R package for subclonal copynumber estimation☆95Feb 20, 2026Updated last month
- ☆27Feb 9, 2026Updated last month
- Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.☆158Feb 12, 2026Updated last month
- Somatic copy number analysis using WGS paired end wholegenome sequencing☆71Nov 20, 2020Updated 5 years ago
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆44Aug 24, 2022Updated 3 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- ☆122Sep 5, 2023Updated 2 years ago
- dN/dS methods to quantify selection in cancer and somatic evolution☆232May 15, 2025Updated 10 months ago
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆100Apr 20, 2021Updated 4 years ago
- Microsatellite Instability (MSI) detection using high-throughput sequencing data.☆115Apr 2, 2025Updated 11 months ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆44Apr 16, 2021Updated 4 years ago
- SV clustering☆31Jul 5, 2021Updated 4 years ago
- Copy number variant detection from targeted DNA sequencing☆606Mar 11, 2026Updated 2 weeks ago
- Microsatellite instability (MSI) detection for tumor only data.☆114Apr 23, 2024Updated last year
- Summarize, Analyze and Visualize MAF files from TCGA or in-house studies.☆486Feb 25, 2026Updated last month
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- microsatellite instability detection using tumor only or paired tumor-normal data☆132Jan 6, 2021Updated 5 years ago
- Model-based tumour subclonal deconvolution using population genetics☆35Dec 2, 2025Updated 3 months ago
- Battenberg algorithm and associated implementation script☆53Oct 21, 2020Updated 5 years ago
- Copy number calling and variant classification using targeted short read sequencing☆145Feb 19, 2026Updated last month
- Inferring and visualizing clonal evolution in multi-sample cancer sequencing☆150Sep 9, 2020Updated 5 years ago
- Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms☆415Mar 13, 2026Updated last week
- Genomic Identification of Significant Targets in Cancer (GISTIC), version 2☆53Apr 8, 2022Updated 3 years ago
- Concordance and contamination estimator for tumor–normal pairs☆59Oct 22, 2024Updated last year
- deconstructSigs☆144Apr 24, 2023Updated 2 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Mutational signature analysis for low statistics SNV data☆64Aug 7, 2024Updated last year
- Workflow for Sequenza, cellularity and ploidy☆27Aug 19, 2025Updated 7 months ago
- Somatic copy variant caller (CNV) for next generation sequencing☆75Sep 12, 2024Updated last year
- ☆11Apr 25, 2024Updated last year
- Framework for Metastatic And Clonal History INtegrative Analysis☆36Mar 5, 2021Updated 5 years ago
- A framework to infer mutational signatures in cancer over time☆56Jul 9, 2019Updated 6 years ago
- DeTiN is designed to measure tumor-in-normal contamination and improve somatic variant detection sensitivity when using a contaminated ma…☆53May 20, 2022Updated 3 years ago
- Application for inferring subclonal composition and evolution from whole-genome sequencing data.☆114Oct 12, 2022Updated 3 years ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Jun 7, 2019Updated 6 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Microassembly based somatic variant caller for NGS data☆154Jun 23, 2022Updated 3 years ago
- Software program for checking sample matching for NGS data☆138Jun 20, 2024Updated last year
- ☆36Jul 28, 2019Updated 6 years ago
- SigProfilerMatrixGenerator creates mutational matrices for all types of somatic mutations. It allows downsizing the generated mutations o…☆119Feb 8, 2026Updated last month
- A computational method for inferring the cancer cell fraction of tumour structural variation from whole-genome sequencing data.☆42Aug 21, 2025Updated 7 months ago
- Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.☆203Mar 20, 2024Updated 2 years ago
- An R package to time somatic mutations☆67Dec 12, 2020Updated 5 years ago