vanallenlab / moalmanacLinks
Molecular Oncology Almanac, a clinical interpretation algorithm paired with a novel underlying knowledge base for precision cancer medicine
☆16Updated 2 months ago
Alternatives and similar repositories for moalmanac
Users that are interested in moalmanac are comparing it to the libraries listed below
Sorting:
- Model-based tumour subclonal deconvolution using population genetics☆33Updated last week
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- Explore the cancer relevance of your gene list☆51Updated 6 months ago
- ☆22Updated 7 months ago
- Advanced plotting functions for CNV data generated by CNV-Seq and Control Freec☆13Updated 5 years ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆38Updated last year
- Filter and prioritize fusion calls☆20Updated 11 months ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Repo that aids in the detection of microsatellite instabilities (MSI) from sequencing data☆20Updated last year
- An R package for predicting HR deficiency from mutation contexts☆29Updated 6 months ago
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆31Updated 2 years ago
- DriverPower☆26Updated 7 months ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- ☆18Updated 4 years ago
- Multi-sample cancer phylogeny reconstruction☆35Updated 7 years ago
- Codes and Data for FFPEsig manuscript☆17Updated last year
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆21Updated 3 years ago
- Workflow for Sequenza, cellularity and ploidy☆20Updated 2 weeks ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated 5 months ago
- 📊Evaluating, filtering, comparing, and visualising VCF☆28Updated 2 years ago
- This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…☆16Updated last year
- CNV detection tool for targeted NGS panel data☆16Updated 3 years ago
- All-FIT - Allele-Frequency-based Imputation of Tumor Purity☆18Updated 5 years ago
- ☆33Updated 3 years ago
- Fork of https://bitbucket.org/mcgranahanlab/lohhla☆17Updated 5 years ago
- DRAGEN Tumor/Normal workflow post-processing☆22Updated last year
- Texomer: Integrating Analysis of Cancer Genome and Transcriptome Sequencing Data☆21Updated 5 years ago
- ☆14Updated 3 months ago
- MicrOSAtellite Instability Classifier☆15Updated 7 years ago
- Irons out wrinkles in noisy coverage data using robust PCA☆15Updated 3 months ago