broadinstitute / PhylogicNDTLinks
☆73Updated last month
Alternatives and similar repositories for PhylogicNDT
Users that are interested in PhylogicNDT are comparing it to the libraries listed below
Sorting:
- ☆116Updated last year
- An R package to time somatic mutations☆61Updated 4 years ago
- A quickstart tool for AmpliconArchitect. Performs all preliminary steps (alignment, CNV calling, seed interval detection) required prior …☆66Updated 3 weeks ago
- Microsatellite instability (MSI) detection for tumor only data.☆106Updated last year
- ☆115Updated last year
- Assignment of known mutational signatures to individual samples and individual somatic mutations☆54Updated 3 weeks ago
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆75Updated last year
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆73Updated 2 years ago
- ☆43Updated 2 years ago
- Estimate locus specific human LINE-1 expression.☆35Updated 2 years ago
- HMMRATAC peak caller for ATAC-seq data☆100Updated 6 months ago
- This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and In…☆53Updated 4 years ago
- Somatic copy number analysis using WGS paired end wholegenome sequencing☆71Updated 4 years ago
- Analysis pipeline for ATAC-seq Data☆61Updated 3 years ago
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆97Updated 4 years ago
- Allele-specific alignment sorting☆55Updated 2 years ago
- Battenberg R package for subclonal copynumber estimation☆86Updated last week
- Software program for checking sample matching for NGS data☆132Updated 11 months ago
- ☆91Updated 2 weeks ago
- nextNEOpi: a comprehensive pipeline for computational neoantigen prediction☆73Updated 2 weeks ago
- nucleosome calling using ATAC-seq☆106Updated 4 years ago
- STAR based ENCODE Long RNA-Seq processing pipeline☆94Updated 4 years ago
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆113Updated 4 months ago
- ☆69Updated last year
- A toolkit for QC and visualization of ATAC-seq results.☆70Updated 4 months ago
- ☆21Updated this week
- release version☆53Updated 2 years ago
- A method for circular DNA detection based on probabilistic mapping of ultrashort reads☆63Updated 10 months ago
- SigProfilerMatrixGenerator creates mutational matrices for all types of somatic mutations. It allows downsizing the generated mutations o…☆107Updated 2 weeks ago
- Genomic Identification of Significant Targets in Cancer (GISTIC), version 2☆51Updated 3 years ago