broadinstitute / PhylogicNDT
☆70Updated 6 months ago
Related projects ⓘ
Alternatives and complementary repositories for PhylogicNDT
- ☆103Updated last year
- Microsatellite instability (MSI) detection for tumor only data.☆94Updated 6 months ago
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆94Updated 3 years ago
- An R package to time somatic mutations☆60Updated 3 years ago
- Assignment of known mutational signatures to individual samples and individual somatic mutations☆47Updated last week
- R package containing useful functions for mutational signature analysis☆80Updated this week
- Somatic copy number analysis using WGS paired end wholegenome sequencing☆69Updated 4 years ago
- A quickstart tool for AmpliconArchitect. Performs all preliminary steps (alignment, CNV calling, seed interval detection) required prior …☆57Updated last month
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆74Updated last year
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆72Updated last year
- Allele-specific alignment sorting☆53Updated last year
- Relevant papers for CNV and SV approaches☆94Updated 2 weeks ago
- Inferring and visualizing clonal evolution in multi-sample cancer sequencing☆142Updated 4 years ago
- Battenberg R package for subclonal copynumber estimation☆82Updated last week
- ☆65Updated last year
- ☆38Updated 9 months ago
- ☆19Updated this week
- This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and In…☆50Updated 4 years ago
- ☆115Updated last year
- A method for circular DNA detection based on probabilistic mapping of ultrashort reads☆61Updated 4 months ago
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆69Updated 5 months ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 3 years ago
- Dynamics analysis of Alternative PolyAdenylation from RNA-seq☆50Updated last year
- Snakemake-based workflow for detecting structural variants in genomic data☆77Updated 9 months ago
- HMMRATAC peak caller for ATAC-seq data☆99Updated last week
- Estimate locus specific human LINE-1 expression.☆32Updated 2 years ago
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆101Updated 4 months ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 5 years ago
- SNV calling from single cell sequencing☆84Updated last week
- ☆37Updated last year