broadinstitute / PhylogicNDTLinks
☆75Updated 4 months ago
Alternatives and similar repositories for PhylogicNDT
Users that are interested in PhylogicNDT are comparing it to the libraries listed below
Sorting:
- A quickstart tool for AmpliconArchitect. Performs all preliminary steps (alignment, CNV calling, seed interval detection) required prior …☆68Updated last month
- An R package to time somatic mutations☆62Updated 4 years ago
- ☆117Updated last year
- ☆116Updated last year
- A tool for the calculation of RNA-editing index for RNA seq data☆43Updated last year
- Probabilistic model for inferring clonal population structure from deep NGS sequencing.☆107Updated 5 years ago
- GIREMI is a method that can identify RNA editing sites using one RNA-seq data set without requiring genome sequence data.☆44Updated 8 years ago
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆75Updated 2 years ago
- A modular, containerized pipeline for ATAC-seq data processing☆58Updated 3 months ago
- ☆71Updated 2 years ago
- SNV calling from single cell sequencing☆105Updated 9 months ago
- Battenberg R package for subclonal copynumber estimation☆90Updated last month
- DeCiFer is an algorithm that simultaneously selects mutation multiplicities and clusters SNVs by their corresponding descendant cell frac…☆21Updated last year
- Estimate locus specific human LINE-1 expression.☆37Updated 2 years ago
- HMMRATAC peak caller for ATAC-seq data☆99Updated 9 months ago
- REDItools are python scripts to investigate RNA editing at genomic scale.☆68Updated last month
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆40Updated 3 years ago
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆74Updated 2 years ago
- A toolkit for QC and visualization of ATAC-seq results.☆70Updated 7 months ago
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆97Updated 4 years ago
- Links to ATAC-seq analysis tools☆69Updated 4 years ago
- Genomic Identification of Significant Targets in Cancer (GISTIC), version 2☆52Updated 3 years ago
- Tools to analyze Dip-C (or other 3C/Hi-C) data☆70Updated 9 months ago
- Dynamics analysis of Alternative PolyAdenylation from RNA-seq☆61Updated last year
- ☆38Updated 5 years ago
- mgatk: mitochondrial genome analysis toolkit☆108Updated 7 months ago
- Somatic copy number analysis using WGS paired end wholegenome sequencing☆72Updated 4 years ago
- Full-length transcriptome splicing and mutation analysis☆84Updated last year
- nextNEOpi: a comprehensive pipeline for computational neoantigen prediction☆76Updated 2 months ago
- ☆45Updated 2 years ago