mskcc / mutation-signaturesLinks
Create mutation signatures from MAF's, and decompose them into Stratton signatures
☆60Updated 6 years ago
Alternatives and similar repositories for mutation-signatures
Users that are interested in mutation-signatures are comparing it to the libraries listed below
Sorting:
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆98Updated 4 years ago
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆72Updated last year
- Filters for false-positive mutation calls in NGS☆34Updated 6 years ago
- DeTiN is designed to measure tumor-in-normal contamination and improve somatic variant detection sensitivity when using a contaminated ma…☆53Updated 3 years ago
- ☆72Updated 2 years ago
- identifying mutational significance in cancer genomes☆62Updated 3 years ago
- Somatic copy variant caller (CNV) for next generation sequencing☆75Updated last year
- Collection of CGAT NGS Pipelines☆43Updated 7 years ago
- ☆39Updated 4 years ago
- Framework to process and call somatic variation from NGS dataset generated using MSK-IMPACT assay☆57Updated 4 years ago
- Exome/Capture/RNASeq Pipeline Implementation using snakemake☆47Updated 7 years ago
- Somatic copy number analysis using WGS paired end wholegenome sequencing☆72Updated 5 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- QDNAseq package for Bioconductor☆53Updated last year
- ☆69Updated 3 years ago
- ☆36Updated 6 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 3 years ago
- ☆13Updated 8 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆43Updated 4 years ago
- Tumor Mutational Burden☆63Updated 4 months ago
- QC3, a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.☆32Updated 9 years ago
- DCC uses output from the STAR read mapper to systematically detect back-splice junctions in next-generation sequencing data. DCC applies …☆37Updated 3 years ago
- Genomic Association Tester☆35Updated 2 years ago
- Battenberg R package for subclonal copynumber estimation☆93Updated 2 weeks ago
- This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and In…☆55Updated 5 years ago
- An R package for inferring the subclonal architecture of tumors☆122Updated 2 years ago
- R package for inferring copy number from read depth☆32Updated 3 years ago
- An R package for predicting HR deficiency from mutation contexts☆30Updated 10 months ago
- Burden testing against public controls☆50Updated last year
- Tools for extracting read counts and gc and mappability statistics in preparation for running HMMCopy.☆42Updated 4 years ago