Fast and accurate gene fusion detection from RNA-Seq data
☆262Sep 21, 2025Updated 6 months ago
Alternatives and similar repositories for arriba
Users that are interested in arriba are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- STAR-Fusion codebase☆249Oct 4, 2025Updated 5 months ago
- Fast fusion detection using kallisto☆79Jun 11, 2025Updated 9 months ago
- Gene Fusion Visualiser☆52Jan 15, 2023Updated 3 years ago
- GRIDSS: the Genomic Rearrangement IDentification Software Suite☆282May 21, 2025Updated 10 months ago
- RNA-seq analysis pipeline for detection of gene-fusions☆172Updated this week
- Software program for checking sample matching for NGS data☆138Jun 20, 2024Updated last year
- Python package to annotate and visualize gene fusions.☆65Sep 30, 2024Updated last year
- FusionInspector code☆59Updated this week
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆29Jun 6, 2024Updated last year
- Finder of Somatic Fusion Genes in RNA-seq data☆149Sep 9, 2025Updated 6 months ago
- fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing☆831Feb 10, 2026Updated last month
- Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.☆158Feb 12, 2026Updated last month
- Concordance and contamination estimator for tumor–normal pairs☆59Oct 22, 2024Updated last year
- NeoFuse is a user-friendly pipeline for the prediction of fusion neoantigens from tumor RNA-seq data.☆20Aug 9, 2022Updated 3 years ago
- Copy number variant detection from targeted DNA sequencing☆606Mar 11, 2026Updated last week
- Annotation and Ranking of Structural Variation☆288Updated this week
- Gene fusion detection and visualization☆133Feb 21, 2022Updated 4 years ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Dec 8, 2020Updated 5 years ago
- BAM Statistics, Feature Counting and Annotation☆152Mar 16, 2026Updated last week
- Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data☆175Aug 22, 2024Updated last year
- Microsatellite Instability (MSI) detection using high-throughput sequencing data.☆115Apr 2, 2025Updated 11 months ago
- chimeraviz is an R package that automates the creation of chimeric RNA visualizations.☆39Nov 25, 2023Updated 2 years ago
- The next version of bwa-mem☆824Oct 15, 2025Updated 5 months ago
- DELLY2: Structural variant discovery by integrated paired-end and split-read analysis☆508Feb 26, 2026Updated 3 weeks ago
- Various algorithms for analysing genomics data☆266Updated this week
- Mutation detection using GATK4 best practices and latest RNA editing filters resources. Works with both Hg38 and Hg19☆78Jan 13, 2026Updated 2 months ago
- ASCAT R package☆199Feb 12, 2026Updated last month
- VarDict☆203Jan 5, 2024Updated 2 years ago
- structural variant calling and genotyping with existing tools, but, smoothly.☆264Jun 17, 2024Updated last year
- Strelka2 germline and somatic small variant caller☆390Dec 29, 2021Updated 4 years ago
- Structural variation and indel detection by local assembly☆254Mar 17, 2026Updated last week
- Fast HLA type inference from whole-genome data☆143Apr 3, 2025Updated 11 months ago
- Tools for working with genomic and high throughput sequencing data.☆355Mar 16, 2026Updated last week
- BEDOPS: high-performance genomic feature operations☆364Apr 29, 2025Updated 10 months ago
- RTG Tools: Utilities for accurate VCF comparison and manipulation☆334May 27, 2025Updated 9 months ago
- Plot structural variant signals from many BAMs and CRAMs☆560Jul 13, 2024Updated last year
- Bayesian haplotype-based mutation calling☆323Feb 13, 2026Updated last month
- A tool for somatic structural variant calling using long reads☆166Mar 12, 2026Updated last week
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Apr 7, 2022Updated 3 years ago