suhrig / arriba
Fast and accurate gene fusion detection from RNA-Seq data
☆234Updated this week
Alternatives and similar repositories for arriba:
Users that are interested in arriba are comparing it to the libraries listed below
- A package for including transposable elements in differential enrichment analysis of sequencing datasets.☆244Updated last month
- This Snakemake pipeline implements the GATK best-practices workflow☆250Updated last year
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆210Updated last week
- SUPPA: Fast quantification of splicing and differential splicing☆272Updated 9 months ago
- ATAC-seq peak-calling and QC analysis pipeline☆196Updated last week
- Plot structural variant signals from many BAMs and CRAMs☆540Updated 8 months ago
- ASCAT R package☆176Updated 3 months ago
- ☆264Updated last month
- A short tutorial on how to use RSEM☆136Updated 4 years ago
- Application for making ENCODE Blacklists☆294Updated 3 years ago
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆156Updated last year
- STAR-Fusion codebase☆239Updated last month
- Quick mining and visualization of NGS data by integrating genomic databases☆264Updated last year
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆207Updated 3 weeks ago
- A collection of scripts and notes related to genomics and bioinformatics☆207Updated last month
- Miscellaneous collection of Python and R scripts for processing Iso-Seq data☆264Updated last year
- HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.☆239Updated 3 months ago
- Detecting sites of genomic enrichment☆190Updated last year
- classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF☆212Updated 8 months ago
- Discovering known and novel miRNAs from small RNA sequencing data☆145Updated 6 months ago
- ☆147Updated 2 years ago
- GRIDSS: the Genomic Rearrangement IDentification Software Suite☆266Updated last year
- An ensemble approach to accurately detect somatic mutations using SomaticSeq☆197Updated this week
- Annotation and Ranking of Structural Variation☆246Updated 2 weeks ago
- parallel fastq-dump wrapper☆288Updated last year
- Web application to explore the Sequence Read Archive.☆213Updated 2 months ago
- RNA-Seq analysis workflow☆104Updated 3 years ago
- Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae …☆212Updated 9 months ago
- ☆244Updated 4 months ago
- RNA-seq workflow using STAR and DESeq2☆339Updated 7 months ago