Fast and accurate gene fusion detection from RNA-Seq data
☆262Sep 21, 2025Updated 5 months ago
Alternatives and similar repositories for arriba
Users that are interested in arriba are comparing it to the libraries listed below
Sorting:
- STAR-Fusion codebase☆248Oct 4, 2025Updated 4 months ago
- Fast fusion detection using kallisto☆79Jun 11, 2025Updated 8 months ago
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆29Jun 6, 2024Updated last year
- Gene Fusion Visualiser☆51Jan 15, 2023Updated 3 years ago
- RNA-seq analysis pipeline for detection of gene-fusions☆171Feb 10, 2026Updated 3 weeks ago
- GRIDSS: the Genomic Rearrangement IDentification Software Suite☆279May 21, 2025Updated 9 months ago
- Python package to annotate and visualize gene fusions.☆65Sep 30, 2024Updated last year
- Concordance and contamination estimator for tumor–normal pairs☆59Oct 22, 2024Updated last year
- Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.☆158Feb 12, 2026Updated 2 weeks ago
- Software program for checking sample matching for NGS data☆137Jun 20, 2024Updated last year
- Gene fusion detection and visualization☆131Feb 21, 2022Updated 4 years ago
- FusionInspector code☆59Updated this week
- Annotation and Ranking of Structural Variation☆287Oct 7, 2025Updated 4 months ago
- Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data☆175Aug 22, 2024Updated last year
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Dec 8, 2020Updated 5 years ago
- Finder of Somatic Fusion Genes in RNA-seq data☆148Sep 9, 2025Updated 5 months ago
- fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing☆826Feb 10, 2026Updated 3 weeks ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Apr 7, 2022Updated 3 years ago
- Microsatellite Instability (MSI) detection using high-throughput sequencing data.☆115Apr 2, 2025Updated 11 months ago
- BAM Statistics, Feature Counting and Annotation☆152Feb 12, 2026Updated 2 weeks ago
- Copy number variant detection from targeted DNA sequencing☆602Feb 23, 2026Updated last week
- Fast HLA type inference from whole-genome data☆142Apr 3, 2025Updated 11 months ago
- structural variant calling and genotyping with existing tools, but, smoothly.☆264Jun 17, 2024Updated last year
- Mutation detection using GATK4 best practices and latest RNA editing filters resources. Works with both Hg38 and Hg19☆78Jan 13, 2026Updated last month
- Bayesian haplotype-based mutation calling☆323Feb 13, 2026Updated 2 weeks ago
- ASCAT R package☆199Feb 12, 2026Updated 2 weeks ago
- The next version of bwa-mem☆819Oct 15, 2025Updated 4 months ago
- Structural variation and indel detection by local assembly☆252Sep 16, 2025Updated 5 months ago
- Various algorithms for analysing genomics data☆264Updated this week
- chimeraviz is an R package that automates the creation of chimeric RNA visualizations.☆39Nov 25, 2023Updated 2 years ago
- RTG Tools: Utilities for accurate VCF comparison and manipulation☆334May 27, 2025Updated 9 months ago
- Strelka2 germline and somatic small variant caller☆390Dec 29, 2021Updated 4 years ago
- DELLY2: Structural variant discovery by integrated paired-end and split-read analysis☆506Updated this week
- A tool for somatic structural variant calling using long reads☆162Oct 20, 2025Updated 4 months ago
- Battenberg R package for subclonal copynumber estimation☆95Feb 20, 2026Updated last week
- VarDict Java port☆138Jan 5, 2024Updated 2 years ago
- VarDict☆201Jan 5, 2024Updated 2 years ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆58Updated this week
- Plot structural variant signals from many BAMs and CRAMs☆558Jul 13, 2024Updated last year