caravagnalab / mobsterLinks
Model-based subclonal deconvolution from bulk sequencing.
☆33Updated 7 months ago
Alternatives and similar repositories for mobster
Users that are interested in mobster are comparing it to the libraries listed below
Sorting:
- Implementation of FACETS for Terra☆12Updated 2 years ago
- Explore the cancer relevance of your gene list☆51Updated 5 months ago
- Code accompanying The Evolutionary history of 2,658 cancers☆46Updated 4 years ago
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆21Updated 3 years ago
- DriverPower☆26Updated 6 months ago
- Conveniently perform ASCAT copy-number analysis from Tumor-Normal or Tumor only BAM files in R☆11Updated 3 years ago
- A framework to infer mutational signatures in cancer over time☆55Updated 6 years ago
- A tool kit for dissecting cancer evolution from multi-region derived tumor biopsies via somatic mutations☆36Updated 3 years ago
- iread☆25Updated 4 years ago
- A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)☆29Updated 5 years ago
- Code accompanying "The evolutionary history of 2,658 cancers", Nature 578, 122–128 (2020)☆17Updated 5 years ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆43Updated 4 years ago
- ☆16Updated 2 years ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated 4 months ago
- Git repo for CONIPHER tree building☆22Updated 4 months ago
- SelectiOn in PRotein ANnotated regiOns. Adapted dN/dS based method to detect selection in specific protein regions☆11Updated last year
- CNAqc - Copy Number Alteration (CNA) Quality Check package☆22Updated 2 months ago
- A computational method for inferring the cancer cell fraction of tumour structural variation from whole-genome sequencing data.☆41Updated 4 months ago
- Filtering of PDX samples for mouse derived reads☆28Updated 2 years ago
- Tool for analyzing the inter-mutational distances between SNV-SNV and INDEL-INDEL mutations. Tool separates mutations into clustered and …☆12Updated 2 weeks ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆37Updated last year
- cDriver R package for finding candidate driver genes in cancers☆18Updated 7 years ago
- Single Cell Analysis Automated Workflow☆27Updated 2 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆16Updated 3 years ago
- Quantifying copy number signatures from absolute copy number profiles☆24Updated 2 weeks ago
- mutSignatures R package - updated (dev) version - 2.1.4☆14Updated 2 years ago
- Bead-based single-cell atac processing☆33Updated 3 years ago
- CNV analysis workflow code for the manuscript☆13Updated 5 years ago
- Algorithm for detecting alternative splicing in a population of single cells. See details in Welch et al., Nucleic Acids Research 2016: h…☆22Updated 9 years ago