Alternatives and similar repositories for cola:

Users that are interested in cola are comparing it to the libraries listed below

• waldronlab / HGNChelper
  Identify and correct invalid gene symbols
  ☆58Updated 5 months ago
• montilab / hypeR
  An R Package for Geneset Enrichment Workflows
  ☆76Updated last month
• kevinblighe / scDataviz
  scDataviz: single cell dataviz and downstream analyses
  ☆63Updated 3 years ago
• kevinrue / velociraptor
  Toolkit for Single-Cell Velocity
  ☆55Updated 4 months ago
• cansysbio / ConsensusTME
  ConsensusTME Gene Sets and R Script
  ☆39Updated 11 months ago
• sjczheng / EpiDISH
  This package contains a reference-based function to infer the proportions of a priori known cell subtypes present in a sample representin…
  ☆50Updated 5 months ago
• YuLab-SMU / ggsc
  🧠 Visualizing Single Cell and Spatial Transcriptomics
  ☆47Updated 3 weeks ago
• Simon-Leonard / FlexDotPlot
  R package for Flexible dot plots
  ☆29Updated 2 years ago
• montilab / BS831
  Course Materials for Genomics Data Mining
  ☆22Updated 3 months ago
• kevinblighe / CorLevelPlot
  Visualise correlation results and test significancies of these
  ☆23Updated 5 years ago
• ConesaLab / MultiPower
  Statistical power studies for multi-omics experiments.
  ☆31Updated 3 months ago
• icbi-lab / Immunophenogram
  ☆40Updated 7 years ago
• Bioconductor / OrchestratingSingleCellAnalysis-release
  An online companion to the OSCA manuscript demonstrating Bioconductor resources and workflows for single-cell RNA-seq analysis.
  ☆36Updated 2 years ago
• PeeperLab / Rtoolbox
  Toolbox with R scripts
  ☆38Updated 6 years ago
• oganm / homologene
  An r package that works as a wrapper to homologene
  ☆45Updated last year
• crazyhottommy / scRNA-seq-workshop-Fall-2019
  Harvard FAS informatics scRNAseq workshop website
  ☆37Updated 5 years ago
• niaid / dsb
  Normalize CITEseq Data
  ☆65Updated last month
• crazyhottommy / scATACutils
  R/Bioconductor package for working with 10x scATACseq data
  ☆39Updated last year
• XSLiuLab / tumor-immunogenicity-score
  TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020
  ☆32Updated 3 years ago
• LTLA / SingleCellThoughts
  Assorted thoughts, explanations and justifications for code in the scran package and the simpleSingleCell workflow.
  ☆44Updated 4 years ago
• plger / pipeComp
  A R framework for pipeline benchmarking, with application to single-cell RNAseq
  ☆41Updated 3 years ago
• jgamache014 / snRNA-seq-workflow
  Human brain, >200,000 nuclei
  ☆24Updated 3 years ago
• zdebruine / singlet
  Single-cell analysis with non-negative matrix factorization
  ☆44Updated 6 months ago
• saezlab / CollecTRI
  Gene regulatory network containing signed transcription factor-target gene interactions
  ☆76Updated last year
• C3BI-pasteur-fr / UTechSCB-SCHNAPPs
  Shiny app for the analysis of single cell data
  ☆26Updated last month
• wmacnair / SampleQC
  Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data
  ☆37Updated 2 years ago
• JEFworks / liger
  Lightweight Iterative Gene set Enrichment in R
  ☆56Updated 7 months ago
• UCLouvain-CBIO / depmap
  Cancer Dependency Map package
  ☆29Updated 8 months ago
• randel / MIND
  Using Bulk Gene Expression to Estimate Cell-Type-Specific Gene Expression via Deconvolution
  ☆45Updated 2 years ago
• myles-lewis / glmmSeq
  Gene-level general linear mixed model
  ☆21Updated 3 months ago