A General Framework for Consensus Partitioning
☆64Jan 30, 2026Updated last month
Alternatives and similar repositories for cola
Users that are interested in cola are comparing it to the libraries listed below
Sorting:
- Multi-Omics integration and VIsualization in Cancer Subtyping☆146Jul 19, 2021Updated 4 years ago
- Prostate Cancer Alteration Signature Analysis https://xsliulab.github.io/PC_CNA_signature/☆13May 17, 2021Updated 4 years ago
- ☆13Jan 8, 2026Updated last month
- TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020☆33Sep 16, 2021Updated 4 years ago
- Inferring and visualizing clonal evolution in multi-sample cancer sequencing☆150Sep 9, 2020Updated 5 years ago
- Updated SignatureAnalyzer-GPU with mutational spectra & RNA expression compatibility.☆81Jan 20, 2026Updated last month
- Draw heatmap simply using a tidy data frame☆357Feb 7, 2026Updated last month
- Scissor package☆253May 10, 2024Updated last year
- Explore the cancer relevance of your gene list☆53Dec 17, 2025Updated 2 months ago
- visualization tools for exon/junction coverage☆11Dec 30, 2019Updated 6 years ago
- Bayesian network plot for the enrichment analysis results☆67Oct 2, 2024Updated last year
- Bayesian mixture models for estimating and clustering cancer cell fractions☆24Dec 20, 2022Updated 3 years ago
- A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution method…☆524Jan 5, 2026Updated 2 months ago
- NOTE: This package has been renamed to sparrow and will be submitted to Bioconductor 3.14. Please use that package instead. This is kept …☆21Nov 16, 2020Updated 5 years ago
- Bedfile perturbation tool☆17Updated this week
- An R Package based on JavaScript libraries for Visualization of Interactive Circos Plot☆28Jul 26, 2022Updated 3 years ago
- DriverPower☆26Jan 18, 2025Updated last year
- A framework to infer mutational signatures in cancer over time☆56Jul 9, 2019Updated 6 years ago
- ☆15Mar 31, 2022Updated 3 years ago
- CellNet, for cancer☆10Jul 14, 2022Updated 3 years ago
- CellAnn☆12Nov 3, 2023Updated 2 years ago
- Mutational Signature Comprehensive Analysis Toolkit☆15Feb 19, 2026Updated 2 weeks ago
- An Interactive Consensus Clustering framework for Cross-platform data analysis☆14Jan 28, 2022Updated 4 years ago
- My Self-Study Room: keep tidy and lightweight☆30Apr 25, 2024Updated last year
- SV clustering☆31Jul 5, 2021Updated 4 years ago
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆20Feb 9, 2026Updated 3 weeks ago
- Inference of Minimal Event Distance Aneuploidy Lineage Tree based on single cell copy number profile☆20Sep 8, 2023Updated 2 years ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆44Apr 16, 2021Updated 4 years ago
- Hypoxia associated molecular feature analysis☆36Nov 19, 2019Updated 6 years ago
- GREAT Analysis - Functional Enrichment on Genomic Regions☆97Jan 30, 2026Updated last month
- fastCNV R package to detect putative CNVs in single cell and spatial transcriptomics data☆40Feb 26, 2026Updated last week
- This repository contains the source code of the revised version of MutPanning. MutPanning is publicly available under the BSD3-Clause ope…☆13Nov 12, 2019Updated 6 years ago
- R interface to megadepth: BigWig and BAM related utilities☆13Dec 12, 2024Updated last year
- A computational method for comparing cellular profiles with the flexibility to place a higher weight on functional features of interest.☆12Jan 31, 2023Updated 3 years ago
- Mutational signature analysis for low statistics SNV data☆64Aug 7, 2024Updated last year
- Code accompanying The Evolutionary history of 2,658 cancers☆47Apr 16, 2021Updated 4 years ago
- Demonstration of the use of an R package to organize a data analysis project☆22Mar 30, 2020Updated 5 years ago
- An Expectation-Maximization algorithm to infer mutational signatures☆26Nov 16, 2016Updated 9 years ago
- ☆11Apr 25, 2024Updated last year