Alternatives and similar repositories for signeR

Users that are interested in signeR are comparing it to the libraries listed below

• NCBI-Hackathons / HLAClustRView
  R package specialized in HLA typing clustering and visualization based on specific similarity metrics
  ☆14Updated 6 years ago
• vanallenlab / MutPanningV2
  This repository contains the source code of the revised version of MutPanning. MutPanning is publicly available under the BSD3-Clause ope…
  ☆13Updated 6 years ago
• hase62 / Neoantimon
  Published at Bioinformatics
  ☆12Updated last year
• isugifNF / GATK-flow
  Nextflow implementation of the GATK HaplotypeCaller pipeline
  ☆13Updated last month
• quinlan-lab / ccr
  Building the constrained coding regions (CCR) model
  ☆16Updated 7 years ago
• mskilab-org / gTrack
  R package for visualizing complex and multi-track 1D and 2D genomic data in GenomicRanges framework
  ☆17Updated last year
• researchapps / polysolver
  Singularity port of HLA typing based on an input exome BAM file and is currently infers infers alleles for the three major MHC class I (…
  ☆14Updated 9 years ago
• viq854 / lichee
  Multi-sample cancer phylogeny reconstruction
  ☆36Updated 8 years ago
• rhshah / iAnnotateSV
  iAnnotateSV is a Python library and command-line software toolkit to annotate and visualize structural variants detected from Next Genera…
  ☆16Updated 3 weeks ago
• KChen-lab / Texomer
  Texomer: Integrating Analysis of Cancer Genome and Transcriptome Sequencing Data
  ☆21Updated 5 years ago
• d3b-center / annoFuse
  Filter and prioritize fusion calls
  ☆20Updated last year
• beroukhim-lab / ascets
  This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…
  ☆18Updated last year
• heyuan7676 / ts_eQTLs
  Learn tissue-specificity and tissue-sharing of genetic regulation across 49 tissues using constraint matrix factorization model
  ☆22Updated 5 years ago
• smithlabcode / abismal
  Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.
  ☆20Updated 3 weeks ago
• koelling / amplimap
  amplicon/smMIP mapping and analysis pipeline
  ☆11Updated 3 years ago
• VanLoo-lab / CAMDAC
  ☆11Updated 4 months ago
• ccbiolab / svpluscnv
  Integrative analysis of complex structural variants
  ☆22Updated 5 years ago
• ProSolo / prosolo
  ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.
  ☆21Updated 4 years ago
• MarioniLab / sarlacc
  The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, cl…
  ☆15Updated 6 years ago
• leekgroup / regionReport
  Generate HTML report for a set of genomic regions or DESeq2/edgeR results
  ☆10Updated last year
• gerstung-lab / deepSNV
  The official repository for the deepSNV bioconductor packages. Branch master tracks the official Bioconductor development branch.
  ☆17Updated 3 years ago
• ICGC-TCGA-PanCancer / Seqware-BWA-Workflow
  This is the BWA workflow used in the PanCancer project used to allign all the BAM files.
  ☆11Updated 3 years ago
• favorov / stereogene
  ☆14Updated 4 months ago
• AlgoLab / shark
  Mapping-free software for fishing relevant reads in an RNA-Seq sample
  ☆19Updated 5 years ago
• gymreklab / STRDenovoTools
  Toolkit for calling and analyzing de novo STR mutations
  ☆17Updated 2 years ago
• epigen / scifiRNA-seq
  ☆12Updated 5 years ago
• PersonalizedOncology / ClinVAP
  Clinical Variant Annotation Pipeline
  ☆10Updated 5 years ago
• kuijjerlab / PySNAIL
  Smooth-quantile Normalization Adaptation for Inference of co-expression Links
  ☆16Updated 2 years ago
• beroukhim-lab / BISCUT-py3
  ☆12Updated last year
• gagneurlab / RNAseq-ASHG
  RNA-seq for Mendelian disease diagnostics: A hands-on tutorial through bioinformatic tools and workflows
  ☆17Updated 3 years ago