TojalLab / signeRLinks
☆14Updated last year
Alternatives and similar repositories for signeR
Users that are interested in signeR are comparing it to the libraries listed below
Sorting:
- Nextflow implementation of the GATK HaplotypeCaller pipeline☆13Updated 2 weeks ago
- Multi-sample cancer phylogeny reconstruction☆35Updated 7 years ago
- This repository contains the source code of the revised version of MutPanning. MutPanning is publicly available under the BSD3-Clause ope…☆12Updated 5 years ago
- This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…☆16Updated last year
- R package specialized in HLA typing clustering and visualization based on specific similarity metrics☆12Updated 5 years ago
- iAnnotateSV is a Python library and command-line software toolkit to annotate and visualize structural variants detected from Next Genera…☆16Updated 3 months ago
- R package for visualizing complex and multi-track 1D and 2D genomic data in GenomicRanges framework☆17Updated 6 months ago
- Published at Bioinformatics☆12Updated last year
- ☆12Updated last month
- The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, cl…☆13Updated 6 years ago
- Mapping-free software for fishing relevant reads in an RNA-Seq sample☆18Updated 4 years ago
- Learn tissue-specificity and tissue-sharing of genetic regulation across 49 tissues using constraint matrix factorization model☆22Updated 4 years ago
- Integrative analysis of complex structural variants☆22Updated 4 years ago
- Filter and prioritize fusion calls☆20Updated 9 months ago
- ☆12Updated last year
- Personalized prioritization of driver genes in cancer☆9Updated 3 years ago
- Singularity port of HLA typing based on an input exome BAM file and is currently infers infers alleles for the three major MHC class I (…☆13Updated 8 years ago
- Generate HTML report for a set of genomic regions or DESeq2/edgeR results☆10Updated 6 months ago
- CNAqc - Copy Number Alteration (CNA) Quality Check package☆22Updated last month
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆18Updated this week
- Building the constrained coding regions (CCR) model☆16Updated 6 years ago
- ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.☆22Updated 3 years ago
- Texomer: Integrating Analysis of Cancer Genome and Transcriptome Sequencing Data☆21Updated 4 years ago
- The official repository for the deepSNV bioconductor packages. Branch master tracks the official Bioconductor development branch.☆16Updated 3 years ago
- ☆12Updated last month
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆43Updated 3 years ago
- R package to organise and standardise your genomic variant calls obtained with different callers.☆11Updated 6 years ago
- This is the BWA workflow used in the PanCancer project used to allign all the BAM files.☆11Updated 2 years ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 4 years ago
- Whole genome workflows☆12Updated 8 months ago