ICGC-TCGA-PanCancer / TumorType-WGS
Classifying tumor types based on Whole Genome Sequencing (WGS) data
☆48Updated last year
Alternatives and similar repositories for TumorType-WGS:
Users that are interested in TumorType-WGS are comparing it to the libraries listed below
- ☆53Updated 2 years ago
- DCAP:Integrating multi-omics data with deep learning for predicting cancer prognosis☆21Updated 4 years ago
- repository with the scripts to run examples of the publications with new functionalities of TCGAbiolinks☆14Updated 2 years ago
- Code for paper "A deep profile of gene expression across 18 human cancers"☆19Updated 2 months ago
- Cross-platform normalization enables machine learning model training on microarray and RNA-seq data simultaneously☆35Updated last year
- Relative Expression Ordering Analysis (REOA) package☆20Updated 2 years ago
- Transcriptomic tools to classify bladder tumours according to six published molecular classifications : Baylor, UNC, MDA, Lund, CIT-Curie…☆25Updated 2 years ago
- TIDE (Tumor Immune Dysfunction and Exclusion), a gene expression biomarker to predict the clinical response to immune checkpoint blockade…☆34Updated 2 years ago
- TCGA Workflow: Analyze cancer genomics and epigenomics data using Bioconductor packages☆42Updated last year
- A framework to infer mutational signatures in cancer over time☆53Updated 5 years ago
- A web tool to do automatic spots detections and positional adjustments for Spatial Transcriptomics Datasets.☆23Updated 2 years ago
- Identifying tumor cells at the single-cell level using machine learning☆48Updated 3 months ago
- Homologous recombination deficiency in TCGA PanCancer Atlas☆25Updated 4 years ago
- CRC Subtyping Consortium☆12Updated 6 years ago
- Repository for Cibersortx☆56Updated 3 years ago
- A pipeline for identifying indel derived neoantigens using RNA-Seq data☆29Updated 2 years ago
- Python API for Xena Hub☆53Updated last year
- Immunology-related bioinformatics data and tools☆71Updated 9 months ago
- Matilda is a multi-task framework for learning from single-cell multimodal omics data. Matilda leverages the information from the multi-m…☆20Updated 2 months ago
- R client for the REACTOME Analysis Service for comparative multi-omics gene set analysis☆23Updated 2 months ago
- Deep Learning based cell composition analysis with Scaden.☆76Updated 3 months ago
- jupyter notebook; perform differential gene expression analysis using DESeq2 on TCGA RNAseq data☆32Updated 5 years ago
- Single-Cell Sequencing Quality Control and Processing Software☆30Updated 5 years ago
- scRNAseq integration with triplet neural networks☆40Updated 2 years ago
- ☆60Updated 4 years ago
- A command-line interface and python module for R's GSVA bioconductor package☆13Updated 6 years ago
- cfDNApipe: A comprehensive quality control and analysis pipeline for cell-free DNA high-throughput sequencing data☆63Updated 2 years ago
- Repository for the Broad Institute Proteogenomic Data Analysis Center (PGDAC) established by the NIH Clinical Proteomics Tumor Analysis C…☆34Updated last week
- Hierarchical HotNet is an algorithm for finding hierarchies of active subnetworks.☆36Updated 5 years ago