Classifying tumor types based on Whole Genome Sequencing (WGS) data
☆50Nov 20, 2023Updated 2 years ago
Alternatives and similar repositories for TumorType-WGS
Users that are interested in TumorType-WGS are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- An R package to time somatic mutations☆72Dec 12, 2020Updated 5 years ago
- Tumor type classifier using cancer genomic panel sequencing data☆14Mar 12, 2024Updated 2 years ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆20Dec 8, 2020Updated 5 years ago
- ☆37Jul 28, 2019Updated 7 years ago
- Accucopy is a computational method that infers Allele-Specific Copy Number alterations from low-coverage low-purity tumor sequencing data…☆16Mar 6, 2024Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Clonal and subclonal Copy Number Alteration quality check integrating somatic mutation☆27Aug 31, 2026Updated 2 months ago
- Detects human contamination in bam files☆16Sep 10, 2020Updated 6 years ago
- The official repository for the deepSNV bioconductor packages. Branch master tracks the official Bioconductor development branch.☆17Jun 1, 2022Updated 4 years ago
- Mutational signature analysis for low statistics SNV data☆67Aug 7, 2024Updated 2 years ago
- Model-based tumour subclonal deconvolution using population genetics☆36Dec 2, 2025Updated 11 months ago
- ☆25Jan 18, 2022Updated 4 years ago
- Somatic copy variant caller (CNV) for next generation sequencing☆80Sep 12, 2024Updated 2 years ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆45Apr 16, 2021Updated 5 years ago
- Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids☆32Aug 8, 2023Updated 3 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Image Classification and Feature Extraction with ConvNeXt☆11Nov 14, 2022Updated 3 years ago
- This contains codes for inference using trained DeepPET-OPSCC Models☆10May 6, 2021Updated 5 years ago
- CALDER (Cancer Analysis of Longitudinal Data through Evolutionary Reconstruction) reconstructs evolutionary trees from longitudinal bulk …☆15Nov 28, 2023Updated 2 years ago
- SV clustering☆32Jul 5, 2021Updated 5 years ago
- ☆10Sep 15, 2021Updated 5 years ago
- Genomics Platform Group Reporter☆10Oct 16, 2026Updated 2 weeks ago
- Haplotype-based somatic genome simulator☆10Apr 20, 2026Updated 6 months ago
- ☆13May 14, 2022Updated 4 years ago
- MSKCC Reis-Filho Lab pipeline thingy☆18Sep 6, 2026Updated last month
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Deep learning prognosis for lung cancer☆13Apr 2, 2019Updated 7 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆48May 7, 2019Updated 7 years ago
- ☆44Oct 27, 2018Updated 8 years ago
- ASCAT R package☆205Feb 12, 2026Updated 8 months ago
- Explore the cancer relevance of your gene list☆55Aug 11, 2026Updated 2 months ago
- Code accompanying "The evolutionary history of 2,658 cancers", Nature 578, 122–128 (2020)☆18Jan 15, 2020Updated 6 years ago
- Main repository for Drews et al. (Nature, 2022)☆44Aug 14, 2023Updated 3 years ago
- Viola is a flexible and powerful python package designed specifically for analysis of genomic structural variant (SV) signatures.☆28Jul 26, 2024Updated 2 years ago
- ☆12Nov 28, 2018Updated 7 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆15Oct 13, 2021Updated 5 years ago
- DRAGEN Tumor/Normal workflow post-processing☆24Sep 18, 2023Updated 3 years ago
- R package containing useful functions for mutational signature analysis☆90Oct 26, 2026Updated last week
- Inferring selection in cancer sequencing data using ABC and population based simulations☆11Jan 31, 2021Updated 5 years ago
- ☆14May 29, 2021Updated 5 years ago
- Building classifiers using cancer transcriptomes across 33 different cancer-types☆126Apr 30, 2019Updated 7 years ago
- ☆14Mar 12, 2019Updated 7 years ago