ICGC-TCGA-PanCancer / TumorType-WGSLinks
Classifying tumor types based on Whole Genome Sequencing (WGS) data
☆48Updated last year
Alternatives and similar repositories for TumorType-WGS
Users that are interested in TumorType-WGS are comparing it to the libraries listed below
Sorting:
- A framework to infer mutational signatures in cancer over time☆55Updated 6 years ago
- Phenome Exome Association and Correlation Of Key phenotypes☆29Updated 4 years ago
- A pipeline for identifying indel derived neoantigens using RNA-Seq data☆30Updated 3 years ago
- TCGA Workflow: Analyze cancer genomics and epigenomics data using Bioconductor packages☆49Updated 2 years ago
- 🏺 Exploring novel tumor epitope identification☆36Updated 5 years ago
- Extracting disease-specific genomic coordinates from GWAS catalog☆21Updated 5 years ago
- Cross-platform normalization enables machine learning model training on microarray and RNA-seq data simultaneously☆37Updated 2 years ago
- Code for paper "A deep profile of gene expression across 18 human cancers"☆28Updated 10 months ago
- Model-based tumour subclonal deconvolution using population genetics☆33Updated last month
- Clinical interpretation of somatic mutations in cancer☆49Updated 8 months ago
- Containerized cancer subtype prediction tools for gene expression, miRNA, DNA methylation, somatic mutations and copy number variation.☆28Updated 6 months ago
- ☆59Updated 3 years ago
- TIDE (Tumor Immune Dysfunction and Exclusion), a gene expression biomarker to predict the clinical response to immune checkpoint blockade…☆35Updated 3 years ago
- Transcriptomic tools to classify bladder tumours according to six published molecular classifications : Baylor, UNC, MDA, Lund, CIT-Curie…☆27Updated 2 years ago
- A flexible framework for nucleosome profiling of cell-free DNA☆27Updated 2 years ago
- QBRC Somatic Mutation Calling Pipeline☆16Updated 3 years ago
- Contribution of systemic and somatic factors to clinical response and resistance in urothelial cancer: an exploratory multi-omic analysis☆24Updated 7 years ago
- Fast method for inferring cancer clonal population structure from SNV data.☆60Updated last month
- Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…☆43Updated 5 years ago
- ☆41Updated 7 years ago
- Explore and download data from the recount3 project☆36Updated last month
- Building classifiers using cancer transcriptomes across 33 different cancer-types☆120Updated 6 years ago
- ☆74Updated 4 years ago
- Alleloscope is a method for allele-specific copy number estimation that can be applied to single cell DNA and ATAC sequencing data (separ…☆30Updated 2 years ago
- Hierarchical HotNet is an algorithm for finding hierarchies of active subnetworks.☆38Updated 6 years ago
- Deep neural networks for predicting CpG methylation☆37Updated 8 years ago
- TCGA-Assembler 2☆77Updated 7 years ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆44Updated 4 years ago
- ☆44Updated 7 years ago
- R package to analyze large-scale pharmacogenomic datasets.☆71Updated 3 weeks ago