UMCUGenetics / MutationalPatternsLinks
R package for extracting and visualizing mutational patterns in base substitution catalogues
☆106Updated 2 years ago
Alternatives and similar repositories for MutationalPatterns
Users that are interested in MutationalPatterns are comparing it to the libraries listed below
Sorting:
- Analysis pipeline for cancer sequencing data☆110Updated 3 months ago
- Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.☆149Updated 2 years ago
- R package for bcbio RNA-seq analysis.☆62Updated 10 months ago
- Inferring and visualizing clonal evolution in multi-sample cancer sequencing☆147Updated 4 years ago
- deconstructSigs☆142Updated 2 years ago
- Transcript quantification import for modular pipelines☆141Updated last month
- Light-weight Snakemake workflow for preprocessing and statistical analysis of RNA-seq data☆165Updated 8 months ago
- R package for genomic feature analysis and visualization☆79Updated 3 months ago
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆97Updated 4 years ago
- Create timecourse "fish plots" that show changes in the clonal architecture of tumors☆169Updated last year
- Statistical Analysis of RNA-Seq Tools☆106Updated 4 months ago
- An R package for inferring the subclonal architecture of tumors☆122Updated last year
- Snakefiles for common RNA-seq data analysis workflows (STAR and Kallisto).☆93Updated 8 years ago
- R package for Inference of differentially methylated regions (DMRs) from bisulfite sequencing☆61Updated 2 months ago
- RNA-seq workflow: exploratory analysis and differential expression☆78Updated last year
- R package containing useful functions for mutational signature analysis☆83Updated this week
- This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…☆59Updated 5 years ago
- Battenberg algorithm and associated implementation script☆53Updated 4 years ago
- NGS-pipe: next-generation sequencing pipelines for precision oncology☆113Updated 6 years ago
- ☆72Updated 3 years ago
- integrated RNA-seq Analysis Pipeline☆83Updated 6 years ago
- Copy number calling and variant classification using targeted short read sequencing☆137Updated 3 months ago
- A R package and executable for the preprocessing, statistical analysis, and downstream testing and visualization of differentially methyl…☆44Updated last year
- A tool for bigWig files.☆119Updated 7 years ago
- Somatic copy number analysis using WGS paired end wholegenome sequencing☆72Updated 4 years ago
- Command-line tool for the visualization of splicing events across multiple samples☆130Updated last year
- csf fork of fastqc for usage on selected reads of unaligned bam file☆48Updated 12 years ago
- A collection of resources to filter 'bad' probes from the Illumina 450k and EPIC methylation arrays☆30Updated last year
- DNA methylation analysis notes from Ming Tang☆87Updated 5 years ago
- HMMRATAC peak caller for ATAC-seq data☆99Updated 8 months ago