R package for extracting and visualizing mutational patterns in base substitution catalogues
☆107Nov 22, 2022Updated 3 years ago
Alternatives and similar repositories for MutationalPatterns
Users that are interested in MutationalPatterns are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- deconstructSigs☆144Apr 24, 2023Updated 3 years ago
- The SomaticSignatures package offers the framework for identifying mutational signatures of single nucleotide variants (SNVs) from high-t…☆23May 25, 2020Updated 5 years ago
- highly-efficient & lightweight mutation signature matrix aggregation☆19Jan 12, 2022Updated 4 years ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆61Jun 7, 2019Updated 6 years ago
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆73May 23, 2024Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Genome data visualizations☆224Jan 10, 2026Updated 4 months ago
- Flexible Bayesian inference of mutational signatures☆42Jan 30, 2023Updated 3 years ago
- Predicting oncogenic potential of gene fusions☆13Feb 13, 2016Updated 10 years ago
- Inferring and visualizing clonal evolution in multi-sample cancer sequencing☆149Sep 9, 2020Updated 5 years ago
- An R package for inferring the subclonal architecture of tumors☆124Mar 15, 2026Updated 2 months ago
- Summarize, Analyze and Visualize MAF files from TCGA or in-house studies.☆492Feb 25, 2026Updated 2 months ago
- Explore the cancer relevance of your gene list☆54Dec 17, 2025Updated 5 months ago
- Codes to regenerate figures for mutagen paper☆12Apr 8, 2021Updated 5 years ago
- Analysis pipeline for cancer sequencing data☆112Apr 24, 2026Updated 3 weeks ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.☆160Feb 12, 2026Updated 3 months ago
- R package for extracting mutation signatures from a list of somatic mutations☆37Aug 9, 2019Updated 6 years ago
- 🌲 An easy-to-use and scalable toolkit for genomic alteration signature (a.k.a. mutational signature) analysis and visualization in R htt…☆162Dec 25, 2025Updated 4 months ago
- Codes and Data for FFPEsig manuscript☆17Jan 17, 2024Updated 2 years ago
- BAM Statistics, Feature Counting and Annotation☆154May 8, 2026Updated last week
- SigProfilerTopography allows evaluating the effect of chromatin organization, histone modifications, transcription factor binding, DNA re…☆24May 11, 2026Updated last week
- mutSignatures R package - updated (dev) version - 2.1.4☆14Jan 18, 2023Updated 3 years ago
- Calculates the Variant Allele Fraction of variants in VCF files☆19Nov 28, 2024Updated last year
- Simple matching of HTS samples based on HLA typing☆14Jan 4, 2017Updated 9 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- dN/dS methods to quantify selection in cancer and somatic evolution☆234May 15, 2025Updated last year
- A framework to infer mutational signatures in cancer over time☆58Jul 9, 2019Updated 6 years ago
- SigProfilerMatrixGenerator creates mutational matrices for all types of somatic mutations. It allows downsizing the generated mutations o…☆121May 7, 2026Updated last week
- Quantifying copy number signatures from absolute copy number profiles☆27Jul 23, 2025Updated 9 months ago
- Python function for TMB snake plots☆16Feb 12, 2026Updated 3 months ago
- Updated SignatureAnalyzer-GPU with mutational spectra & RNA expression compatibility.☆83Jan 20, 2026Updated 4 months ago
- ASCAT R package☆200Feb 12, 2026Updated 3 months ago
- SV clustering☆31Jul 5, 2021Updated 4 years ago
- Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms☆418Mar 13, 2026Updated 2 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- WGS Pipeline☆13Jan 19, 2018Updated 8 years ago
- Mutational signature analysis for low statistics SNV data☆66Aug 7, 2024Updated last year
- Personal Cancer Genome Reporter (PCGR)☆277Updated this week
- ☆69Jun 21, 2022Updated 3 years ago
- Somatic coding and non-coding mutation enrichment analysis for tumor WGS data☆12Jun 16, 2021Updated 4 years ago
- Copy number calling and variant classification using targeted short read sequencing☆147Feb 19, 2026Updated 3 months ago
- goleft is a collection of bioinformatics tools distributed under MIT license in a single static binary☆226Sep 18, 2025Updated 8 months ago