UMCUGenetics / MutationalPatternsLinks
R package for extracting and visualizing mutational patterns in base substitution catalogues
☆106Updated 2 years ago
Alternatives and similar repositories for MutationalPatterns
Users that are interested in MutationalPatterns are comparing it to the libraries listed below
Sorting:
- Analysis pipeline for cancer sequencing data☆110Updated 2 months ago
- R package for bcbio RNA-seq analysis.☆62Updated 10 months ago
- Light-weight Snakemake workflow for preprocessing and statistical analysis of RNA-seq data☆165Updated 7 months ago
- R package for genomic feature analysis and visualization☆79Updated 3 months ago
- An R package for inferring the subclonal architecture of tumors☆121Updated last year
- Inferring and visualizing clonal evolution in multi-sample cancer sequencing☆147Updated 4 years ago
- Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.☆149Updated 2 years ago
- Transcript quantification import for modular pipelines☆140Updated 2 weeks ago
- deconstructSigs☆142Updated 2 years ago
- This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…☆59Updated 4 years ago
- Create timecourse "fish plots" that show changes in the clonal architecture of tumors☆169Updated last year
- Battenberg algorithm and associated implementation script☆53Updated 4 years ago
- Command-line tool for the visualization of splicing events across multiple samples☆130Updated last year
- Visualizing transcript structure and annotation using ggplot2☆158Updated 10 months ago
- Statistical Analysis of RNA-Seq Tools☆107Updated 3 months ago
- R package containing useful functions for mutational signature analysis☆82Updated last week
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆97Updated 4 years ago
- Snakefiles for common RNA-seq data analysis workflows (STAR and Kallisto).☆93Updated 7 years ago
- Copy number calling and variant classification using targeted short read sequencing☆136Updated 2 months ago
- HMMRATAC peak caller for ATAC-seq data☆100Updated 8 months ago
- integrated RNA-seq Analysis Pipeline☆84Updated 6 years ago
- Genomic Interactive Visualization Engine☆145Updated 2 years ago
- A tool for bigWig files.☆119Updated 7 years ago
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆115Updated 5 months ago
- NGS-pipe: next-generation sequencing pipelines for precision oncology☆111Updated 6 years ago
- Learning the Variant Call Format☆140Updated last year
- WASP: allele-specific pipeline for unbiased read mapping and molecular QTL discovery☆105Updated 4 years ago
- A collection of resources to filter 'bad' probes from the Illumina 450k and EPIC methylation arrays☆30Updated last year
- This is the Gviz development repository. Gviz plots data and annotation information along genomic coordinates.☆86Updated 5 months ago
- Relevant papers for CNV and SV approaches☆94Updated 8 months ago