UMCUGenetics / MutationalPatternsLinks
R package for extracting and visualizing mutational patterns in base substitution catalogues
☆107Updated 2 years ago
Alternatives and similar repositories for MutationalPatterns
Users that are interested in MutationalPatterns are comparing it to the libraries listed below
Sorting:
- Analysis pipeline for cancer sequencing data☆110Updated 4 months ago
- R package for bcbio RNA-seq analysis.☆62Updated last year
- R package for genomic feature analysis and visualization☆79Updated 5 months ago
- Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.☆151Updated 2 years ago
- Transcript quantification import for modular pipelines☆140Updated 3 weeks ago
- deconstructSigs☆143Updated 2 years ago
- Inferring and visualizing clonal evolution in multi-sample cancer sequencing☆147Updated 5 years ago
- Snakefiles for common RNA-seq data analysis workflows (STAR and Kallisto).☆93Updated 8 years ago
- Command-line tool for the visualization of splicing events across multiple samples☆130Updated last year
- Light-weight Snakemake workflow for preprocessing and statistical analysis of RNA-seq data☆165Updated 9 months ago
- An R package for inferring the subclonal architecture of tumors☆122Updated last year
- This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…☆60Updated 5 years ago
- R package for Inference of differentially methylated regions (DMRs) from bisulfite sequencing☆61Updated 4 months ago
- A tool for bigWig files.☆119Updated 7 years ago
- Snakemake based pipeline for RNA-Seq analysis☆31Updated 6 years ago
- Statistical Analysis of RNA-Seq Tools☆107Updated 5 months ago
- Visualizing transcript structure and annotation using ggplot2☆160Updated last year
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆97Updated 4 years ago
- ☆72Updated 2 years ago
- Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.☆51Updated 7 years ago
- integrated RNA-seq Analysis Pipeline☆83Updated 6 years ago
- ☆72Updated 3 years ago
- Genomic Interactive Visualization Engine☆145Updated 2 years ago
- HMMRATAC peak caller for ATAC-seq data☆99Updated 10 months ago
- Battenberg algorithm and associated implementation script☆53Updated 4 years ago
- This is the Gviz development repository. Gviz plots data and annotation information along genomic coordinates.☆86Updated 7 months ago
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆117Updated 7 months ago
- R package designed to simplify structural variant analysis☆73Updated 3 years ago
- Somatic copy number analysis using WGS paired end wholegenome sequencing☆72Updated 4 years ago
- NGS-pipe: next-generation sequencing pipelines for precision oncology☆114Updated 6 years ago