R package for extracting and visualizing mutational patterns in base substitution catalogues
☆106Nov 22, 2022Updated 3 years ago
Alternatives and similar repositories for MutationalPatterns
Users that are interested in MutationalPatterns are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- deconstructSigs☆144Apr 24, 2023Updated 3 years ago
- The SomaticSignatures package offers the framework for identifying mutational signatures of single nucleotide variants (SNVs) from high-t…☆23May 25, 2020Updated 6 years ago
- highly-efficient & lightweight mutation signature matrix aggregation☆19Jan 12, 2022Updated 4 years ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆61Jun 7, 2019Updated 7 years ago
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆72May 23, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Genome data visualizations☆226Jan 10, 2026Updated 7 months ago
- Flexible Bayesian inference of mutational signatures☆43Jan 30, 2023Updated 3 years ago
- Inferring and visualizing clonal evolution in multi-sample cancer sequencing☆149Sep 9, 2020Updated 5 years ago
- Predicting oncogenic potential of gene fusions☆12Feb 13, 2016Updated 10 years ago
- An R package for inferring the subclonal architecture of tumors☆124Mar 15, 2026Updated 4 months ago
- Summarize, Analyze and Visualize MAF files from TCGA or in-house studies.☆499Feb 25, 2026Updated 5 months ago
- Explore the cancer relevance of your gene list☆56Updated this week
- R package for extracting mutation signatures from a list of somatic mutations☆37Aug 9, 2019Updated 7 years ago
- Codes to regenerate figures for mutagen paper☆12Apr 8, 2021Updated 5 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.☆162Feb 12, 2026Updated 5 months ago
- Analysis pipeline for cancer sequencing data☆113Apr 24, 2026Updated 3 months ago
- 🌲 An easy-to-use and scalable toolkit for genomic alteration signature (a.k.a. mutational signature) analysis and visualization in R htt…☆163Dec 25, 2025Updated 7 months ago
- SigProfilerMatrixGenerator creates mutational matrices for all types of somatic mutations. It allows downsizing the generated mutations o…☆123Jul 21, 2026Updated 3 weeks ago
- Codes and Data for FFPEsig manuscript☆16Jan 17, 2024Updated 2 years ago
- BAM Statistics, Feature Counting and Annotation☆155Updated this week
- Simple matching of HTS samples based on HLA typing☆14Jan 4, 2017Updated 9 years ago
- Python function for TMB snake plots☆16Feb 12, 2026Updated 5 months ago
- WGS Pipeline☆13Jan 19, 2018Updated 8 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Calculates the Variant Allele Fraction of variants in VCF files☆19Nov 28, 2024Updated last year
- dN/dS methods to quantify selection in cancer and somatic evolution☆239May 15, 2025Updated last year
- SigProfilerTopography allows evaluating the effect of chromatin organization, histone modifications, transcription factor binding, DNA re…☆24Jul 8, 2026Updated last month
- mutSignatures R package - updated (dev) version - 2.1.4☆14Jan 18, 2023Updated 3 years ago
- A framework to infer mutational signatures in cancer over time☆58Jul 9, 2019Updated 7 years ago
- Updated SignatureAnalyzer-GPU with mutational spectra & RNA expression compatibility.☆84Jul 23, 2026Updated 2 weeks ago
- Mutational signature analysis for low statistics SNV data☆66Aug 7, 2024Updated 2 years ago
- Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms☆419May 25, 2026Updated 2 months ago
- ASCAT R package☆204Feb 12, 2026Updated 5 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- SV clustering☆32Jul 5, 2021Updated 5 years ago
- Personal Cancer Genome Reporter (PCGR)☆280Updated this week
- ☆69Jun 21, 2022Updated 4 years ago
- goleft is a collection of bioinformatics tools distributed under MIT license in a single static binary☆227Sep 18, 2025Updated 10 months ago
- Copy number calling and variant classification using targeted short read sequencing☆150Feb 19, 2026Updated 5 months ago
- Assignment of known mutational signatures to individual samples and individual somatic mutations☆80Jul 29, 2026Updated last week
- DriverPower☆26Jan 18, 2025Updated last year