A mosaic detecting software based on phasing and random forest
☆72Dec 8, 2025Updated 10 months ago
Alternatives and similar repositories for MosaicForecast
Users that are interested in MosaicForecast are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- DeepMosaic is a deep-learning-based mosaic single nucleotide classification tool without the need of matched control information.☆58May 21, 2026Updated 5 months ago
- A tool to detect postzygotic single-nucleotide mosaicism from unpaired, trio, or paired samples.☆13Feb 23, 2021Updated 5 years ago
- ☆22Feb 5, 2025Updated last year
- This repository collects pipelines, codes, and some intermediate results for adult brain somatic mosaicism study.☆15Jun 14, 2025Updated last year
- BSMN common data processing pipeline☆11Jun 6, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆27Aug 8, 2024Updated 2 years ago
- Structural variant VCF annotation, filtering, duplicate removal and comparison☆37Sep 3, 2026Updated 2 months ago
- Predicts which missense mutations will drive growth of human cancers☆12Sep 2, 2026Updated 2 months ago
- ☆20Feb 18, 2025Updated last year
- HATCHet (Holistic Allele-specific Tumor Copy-number Heterogeneity) is an algorithm that infers allele and clone-specific CNAs and WGDs jo…☆73Sep 29, 2026Updated last month
- Repo that aids in the detection of microsatellite instabilities (MSI) from sequencing data☆21Apr 22, 2024Updated 2 years ago
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆19Mar 5, 2019Updated 7 years ago
- Mutational signature analysis for low statistics SNV data☆67Aug 7, 2024Updated 2 years ago
- R package specialized in HLA typing clustering and visualization based on specific similarity metrics☆14Nov 21, 2019Updated 6 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆12Oct 13, 2021Updated 5 years ago
- PopSTR - A Population based microsatellite genotyper☆33Oct 23, 2023Updated 3 years ago
- Detects human contamination in bam files☆16Sep 10, 2020Updated 6 years ago
- BAMixChecker: A fast and efficient tool for sample matching checkup☆16Jun 12, 2022Updated 4 years ago
- Software program for checking sample matching for NGS data☆146Jun 20, 2024Updated 2 years ago
- MrMosaic (Genomic Mosaic Structural Variant Caller)☆15Jul 21, 2017Updated 9 years ago
- Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data☆180Aug 22, 2024Updated 2 years ago
- ☆80Jun 4, 2021Updated 5 years ago
- NeuSomatic: Deep convolutional neural networks for accurate somatic mutation detection☆174Dec 23, 2021Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Haplotype-based somatic genome simulator☆10Apr 20, 2026Updated 6 months ago
- Application for inferring subclonal composition and evolution from whole-genome sequencing data.☆114Oct 12, 2022Updated 4 years ago
- Complex structural variant detection from WGS data☆32Updated this week
- Plot CNV data with a genome viewer in R☆16Apr 5, 2017Updated 9 years ago
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆28Jun 6, 2024Updated 2 years ago
- Pipeline for structural variant image curation and analysis.☆49Dec 5, 2021Updated 4 years ago
- Accucopy is a computational method that infers Allele-Specific Copy Number alterations from low-coverage low-purity tumor sequencing data…☆16Mar 6, 2024Updated 2 years ago
- Single cell somatic genotyper☆10Sep 28, 2022Updated 4 years ago
- dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCF…☆11Feb 3, 2021Updated 5 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Ancestry and Kinship Tools☆70Apr 20, 2026Updated 6 months ago
- A tool for detecting CNVs from WGS data☆11Jul 9, 2020Updated 6 years ago
- Calls somatic SNVs, indels, and allelic copy number jointly across multiple samples from the same patient. These can be standard tumor/n…☆10Oct 29, 2020Updated 6 years ago
- Support Vector Structural Variation Genotyper☆59May 29, 2020Updated 6 years ago
- Characterization of Germline variants☆102Mar 15, 2022Updated 4 years ago
- DeTiN is designed to measure tumor-in-normal contamination and improve somatic variant detection sensitivity when using a contaminated ma…☆53May 20, 2022Updated 4 years ago
- BreakID: genomics breakpoints identification to detect gene fusion events using discordant pairs and split read☆12Jun 17, 2020Updated 6 years ago