raerose01 / deconstructSigsLinks
deconstructSigs
☆142Updated 2 years ago
Alternatives and similar repositories for deconstructSigs
Users that are interested in deconstructSigs are comparing it to the libraries listed below
Sorting:
- HMMRATAC peak caller for ATAC-seq data☆99Updated 9 months ago
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆97Updated 4 years ago
- Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.☆149Updated 2 years ago
- An R package for inferring the subclonal architecture of tumors☆122Updated last year
- Inferring and visualizing clonal evolution in multi-sample cancer sequencing☆147Updated 4 years ago
- RNA-Seq analysis workflow☆104Updated 4 years ago
- STAR based ENCODE Long RNA-Seq processing pipeline☆95Updated 4 years ago
- Microsatellite instability (MSI) detection for tumor only data.☆108Updated last year
- This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…☆59Updated 5 years ago
- Create timecourse "fish plots" that show changes in the clonal architecture of tumors☆169Updated last year
- ☆116Updated last year
- ☆117Updated last year
- Snakefiles for common RNA-seq data analysis workflows (STAR and Kallisto).☆93Updated 8 years ago
- Command-line tool for the visualization of splicing events across multiple samples☆130Updated last year
- Reference data: BED files, genes, transcripts, variations.☆84Updated 7 years ago
- Somatic copy number analysis using WGS paired end wholegenome sequencing☆72Updated 4 years ago
- nucleosome calling using ATAC-seq☆106Updated 4 years ago
- a snakemake pipeline to process ChIP-seq files from GEO or in-house☆109Updated 5 years ago
- ☆71Updated 2 years ago
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆116Updated 6 months ago
- Copy number calling and variant classification using targeted short read sequencing☆138Updated 4 months ago
- Finder of Somatic Fusion Genes in RNA-seq data☆146Updated 2 years ago
- ATAC-seq snakemake pipeline☆88Updated 5 years ago
- A tool for bigWig files.☆119Updated 7 years ago
- A short tutorial on how to use RSEM☆138Updated 5 years ago
- Software program for checking sample matching for NGS data☆134Updated last year
- ASCAT R package☆186Updated 5 months ago
- A factor analysis package☆100Updated 13 years ago
- ENCODE Uniform processing pipeline for ChIP-seq☆124Updated 5 years ago
- dN/dS methods to quantify selection in cancer and somatic evolution☆223Updated 3 months ago