raerose01 / deconstructSigsLinks
deconstructSigs
☆144Updated 2 years ago
Alternatives and similar repositories for deconstructSigs
Users that are interested in deconstructSigs are comparing it to the libraries listed below
Sorting:
- An R package for inferring the subclonal architecture of tumors☆121Updated 2 years ago
- Inferring and visualizing clonal evolution in multi-sample cancer sequencing☆149Updated 5 years ago
- RNA-Seq analysis workflow☆105Updated 4 years ago
- ☆119Updated 2 years ago
- STAR based ENCODE Long RNA-Seq processing pipeline☆96Updated 4 years ago
- Create timecourse "fish plots" that show changes in the clonal architecture of tumors☆171Updated last week
- Microsatellite instability (MSI) detection for tumor only data.☆113Updated last year
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆100Updated 4 years ago
- HMMRATAC peak caller for ATAC-seq data☆98Updated last year
- microRNA profiling pipeline☆81Updated 4 years ago
- Reference data: BED files, genes, transcripts, variations.☆89Updated 8 years ago
- Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.☆158Updated last week
- Somatic copy number analysis using WGS paired end wholegenome sequencing☆71Updated 5 years ago
- ATAC-seq snakemake pipeline☆88Updated 5 years ago
- A short tutorial on how to use RSEM☆138Updated 5 years ago
- Finder of Somatic Fusion Genes in RNA-seq data☆148Updated 5 months ago
- Software program for checking sample matching for NGS data☆137Updated last year
- A factor analysis package☆106Updated 13 years ago
- Snakefiles for common RNA-seq data analysis workflows (STAR and Kallisto).☆94Updated 8 years ago
- A tool for bigWig files.☆118Updated 7 years ago
- ☆120Updated 2 years ago
- ASCAT R package☆197Updated 4 months ago
- A toolkit for QC and visualization of ATAC-seq results.☆73Updated last year
- This repo has been archived, these workflows are still available in the GATK repository under the scripts directory. The workflows are al…☆78Updated 5 years ago
- a snakemake pipeline to process ChIP-seq files from GEO or in-house☆131Updated last month
- Battenberg algorithm and associated implementation script☆53Updated 5 years ago
- This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…☆62Updated 5 years ago
- ☆83Updated 9 months ago
- A pipeline and a framework for NGS analysis (RNA-seq and scRNA-seq)☆54Updated last week
- DCC/DAC methylation pipeline source☆57Updated 5 years ago