raerose01 / deconstructSigsLinks
deconstructSigs
☆143Updated 2 years ago
Alternatives and similar repositories for deconstructSigs
Users that are interested in deconstructSigs are comparing it to the libraries listed below
Sorting:
- Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.☆155Updated 2 years ago
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆98Updated 4 years ago
- HMMRATAC peak caller for ATAC-seq data☆99Updated last year
- Inferring and visualizing clonal evolution in multi-sample cancer sequencing☆148Updated 5 years ago
- STAR based ENCODE Long RNA-Seq processing pipeline☆96Updated 4 years ago
- An R package for inferring the subclonal architecture of tumors☆122Updated 2 years ago
- RNA-Seq analysis workflow☆105Updated 4 years ago
- ☆120Updated 2 years ago
- Create timecourse "fish plots" that show changes in the clonal architecture of tumors☆171Updated 2 years ago
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆119Updated last month
- Command-line tool for the visualization of splicing events across multiple samples☆132Updated last year
- nucleosome calling using ATAC-seq☆108Updated 4 years ago
- ASCAT R package☆191Updated last month
- A tool for bigWig files.☆118Updated 7 years ago
- A short tutorial on how to use RSEM☆139Updated 5 years ago
- Somatic copy number analysis using WGS paired end wholegenome sequencing☆72Updated 4 years ago
- Reference data: BED files, genes, transcripts, variations.☆88Updated 7 years ago
- Microsatellite instability (MSI) detection for tumor only data.☆111Updated last year
- Software program for checking sample matching for NGS data☆136Updated last year
- Finder of Somatic Fusion Genes in RNA-seq data☆146Updated 2 months ago
- ENCODE Uniform processing pipeline for ChIP-seq☆123Updated 5 years ago
- dN/dS methods to quantify selection in cancer and somatic evolution☆227Updated 6 months ago
- A toolkit for QC and visualization of ATAC-seq results.☆71Updated 10 months ago
- a snakemake pipeline to process ChIP-seq files from GEO or in-house☆110Updated 5 years ago
- AQUAS TF and histone ChIP-seq pipeline☆111Updated 3 years ago
- Generate IGV style locus tracks from bigWig files in R☆173Updated last year
- ☆117Updated 2 years ago
- This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…☆60Updated 5 years ago
- ☆72Updated 2 years ago
- Check strandedness of RNA-Seq fastq files☆127Updated 3 years ago