raerose01 / deconstructSigs
deconstructSigs
☆139Updated last year
Related projects ⓘ
Alternatives and complementary repositories for deconstructSigs
- STAR based ENCODE Long RNA-Seq processing pipeline☆93Updated 3 years ago
- ENCODE Uniform processing pipeline for ChIP-seq☆120Updated 4 years ago
- ASCAT R package☆170Updated 3 weeks ago
- Inferring and visualizing clonal evolution in multi-sample cancer sequencing☆142Updated 4 years ago
- A short tutorial on how to use RSEM☆134Updated 4 years ago
- ☆103Updated last year
- Microsatellite instability (MSI) detection for tumor only data.☆94Updated 6 months ago
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆94Updated 3 years ago
- ☆115Updated last year
- This repo has been archived, these workflows are still available in the GATK repository under the scripts directory. The workflows are al…☆76Updated 4 years ago
- SEACR: Sparse Enrichment Analysis for CUT&RUN☆104Updated last year
- Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.☆142Updated last year
- HMMRATAC peak caller for ATAC-seq data☆99Updated last week
- An R package for inferring the subclonal architecture of tumors☆115Updated last year
- A tool for bigWig files.☆118Updated 6 years ago
- a snakemake pipeline to process ChIP-seq files from GEO or in-house☆103Updated 4 years ago
- nucleosome calling using ATAC-seq☆106Updated 3 years ago
- Copy number calling and variant classification using targeted short read sequencing☆128Updated this week
- Relevant papers for CNV and SV approaches☆94Updated 2 weeks ago
- Somatic copy number analysis using WGS paired end wholegenome sequencing☆69Updated 4 years ago
- Annotates variants in MAF with OncoKB annotation.☆122Updated last month
- Generate IGV style locus tracks from bigWig files in R☆141Updated 3 weeks ago
- RNA-Seq analysis workflow☆105Updated 3 years ago
- Fast and accurate in silico inference of HLA genotypes from RNA-seq☆121Updated 3 months ago
- Detecting sites of genomic enrichment☆187Updated last year
- ☆120Updated 5 years ago
- dN/dS methods to quantify selection in cancer and somatic evolution☆212Updated last year
- phasing and Allele Specific Expression from RNA-seq☆111Updated 4 months ago
- Analysis pipeline for CUT&RUN and CUT&TAG experiments that includes QC, support for spike-ins, IgG controls, peak calling and downstream …☆81Updated last month
- Check strandedness of RNA-Seq fastq files☆115Updated 2 years ago