ding-lab / hotspot3dLinks
3D hotspot mutation proximity analysis tool
☆47Updated 2 years ago
Alternatives and similar repositories for hotspot3d
Users that are interested in hotspot3d are comparing it to the libraries listed below
Sorting:
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.☆51Updated 5 years ago
- ChIP-seq DC and QC Pipeline☆34Updated 4 years ago
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆27Updated last year
- Identifying recurrent mutations in cancer☆37Updated 4 years ago
- ☆44Updated 6 years ago
- CADD scripts release for offline scoring. For more information about CADD, please visit our website☆83Updated last month
- Classifies genes as an oncogene, tumor suppressor gene, or as a non-driver gene by using Random Forests☆49Updated 11 months ago
- ☆48Updated 3 years ago
- Bioinformatics pipeline for selecting patient-specific cancer neoantigen vaccines☆82Updated 5 months ago
- ☆68Updated 3 years ago
- Decrypting somatic mutation patterns to reveal the evolution of cancer☆56Updated 4 years ago
- Python package to annotate and visualize gene fusions.☆63Updated 9 months ago
- Python module for the easy handling and analysis of DNase-seq data☆37Updated 5 years ago
- iCAGES (integrated CAncer GEnome Score) is an effective tool for prioritizing cancer driver genes for a patient☆14Updated 2 years ago
- processes GoT amplicon data and generates a table of metrics☆30Updated 3 years ago
- Filters for false-positive mutation calls in NGS☆30Updated 6 years ago
- Annotation of genomic regions using transcription factor binding sites and epigenetic data☆40Updated 3 years ago
- Pipeline for identifying viral integration and fusion mRNA reads from NGS data. Manuscript is currently in preparation.☆28Updated 4 years ago
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆66Updated 5 years ago
- DEPRECATED. This tool has been superseded by https://github.com/griffithlab/pVACtools☆61Updated 6 years ago
- Preprocessing of single-cell RNA-Seq (deprecated)☆62Updated 6 years ago
- Coda: a convolutional denoising algorithm for genome-wide ChIP-seq data☆33Updated 8 years ago
- ☆19Updated 7 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆42Updated 4 years ago
- identifying mutational significance in cancer genomes☆61Updated 2 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- A continually expanding collection of RNA-seq tools☆51Updated 9 months ago
- A quick and flexible single-cell RNA-seq processing framework on the cloud☆38Updated 5 years ago
- A portable, flexible, parallelized tool for complete processing of massively parallel reporter assay data☆32Updated 6 months ago
- Versatile FASTA/FASTQ demultiplexer.☆33Updated last year