PCAWG-11 / HeterogeneityLinks
Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes
☆44Updated 4 years ago
Alternatives and similar repositories for Heterogeneity
Users that are interested in Heterogeneity are comparing it to the libraries listed below
Sorting:
- ☆47Updated 10 months ago
- An R package to time somatic mutations☆65Updated 4 years ago
- An R package to plot maps of clone distributions in somatic evolution☆17Updated last year
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆27Updated 4 years ago
- Alleloscope is a method for allele-specific copy number estimation that can be applied to single cell DNA and ATAC sequencing data (separ…☆31Updated 2 years ago
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆32Updated 8 months ago
- CNApp represents the first web tool to perform a comprehensive and integrative analysis of copy number alterations (CNAs) in a user-frien…☆20Updated 5 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆47Updated 2 years ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆53Updated 2 years ago
- Scripts needed to generate the figures for the Monocle 2 paper (Qiu et al, 2017)☆29Updated 5 years ago
- a computational pipeline for the quantification of the Tumor Immune contexture from human RNA-seq data☆18Updated 4 years ago
- Code accompanying The Evolutionary history of 2,658 cancers☆46Updated 4 years ago
- ☆39Updated 3 months ago
- CONICS: COpy-Number analysis In single-Cell RNA-Sequencing☆75Updated 2 years ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 3 years ago
- ☆41Updated 7 years ago
- Code accompanying "The evolutionary history of 2,658 cancers", Nature 578, 122–128 (2020)☆17Updated 5 years ago
- ☆52Updated last year
- ConsensusTME Gene Sets and R Script☆39Updated last year
- Homologous recombination deficiency in TCGA PanCancer Atlas☆28Updated 4 years ago
- Main repository for Drews et al. (Nature, 2022)☆42Updated 2 years ago
- ☆34Updated 6 years ago
- Filtering of PDX samples for mouse derived reads☆28Updated 2 years ago
- scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data☆31Updated 2 years ago
- mutation(barcode) caller for 10x single cell data☆45Updated 5 years ago
- ☆12Updated 6 years ago
- ☆34Updated 6 years ago
- Analysis code for "Perturbation-response genes reveal signaling footprints in cancer gene expression"☆20Updated 7 years ago
- scWGCNA☆61Updated 3 years ago
- Inference of Minimal Event Distance Aneuploidy Lineage Tree based on single cell copy number profile☆21Updated 2 years ago