PCAWG-11 / Heterogeneity
Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes
☆43Updated 3 years ago
Alternatives and similar repositories for Heterogeneity:
Users that are interested in Heterogeneity are comparing it to the libraries listed below
- An R package to plot maps of clone distributions in somatic evolution☆17Updated last year
- ☆47Updated last month
- ☆31Updated 5 years ago
- ☆29Updated 6 years ago
- An R package to time somatic mutations☆60Updated 4 years ago
- DeCiFer is an algorithm that simultaneously selects mutation multiplicities and clusters SNVs by their corresponding descendant cell frac…☆20Updated 8 months ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆42Updated last year
- Scripts needed to generate the figures for the Monocle 2 paper (Qiu et al, 2017)☆28Updated 4 years ago
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆42Updated last year
- ☆15Updated 8 months ago
- ☆40Updated 6 years ago
- Alleloscope is a method for allele-specific copy number estimation that can be applied to single cell DNA and ATAC sequencing data (separ…☆29Updated last year
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆25Updated 4 months ago
- ☆12Updated 7 months ago
- ☆31Updated 9 months ago
- Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data☆31Updated last year
- Inference of Minimal Event Distance Aneuploidy Lineage Tree based on single cell copy number profile☆19Updated last year
- a computational pipeline for the quantification of the Tumor Immune contexture from human RNA-seq data☆18Updated 3 years ago
- ☆33Updated 5 years ago
- Clone identification from single-cell data☆61Updated 2 years ago
- ☆45Updated 6 months ago
- CNApp represents the first web tool to perform a comprehensive and integrative analysis of copy number alterations (CNAs) in a user-frien…☆19Updated 5 years ago
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 4 years ago
- <<------ Use SnapATAC!!☆25Updated 5 years ago
- Repository containing all code for secondary analysis in the manuscript "On the design of CRISPR-based single cell molecular screens", Hi…☆26Updated 3 years ago
- Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis☆23Updated 2 years ago
- ☆29Updated 3 weeks ago
- ConsensusTME Gene Sets and R Script☆39Updated 8 months ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated 4 months ago
- SIB/Scilifelab autumn school in single cell omics 2019.☆22Updated 5 years ago