PCAWG-11 / HeterogeneityLinks
Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes
☆43Updated 4 years ago
Alternatives and similar repositories for Heterogeneity
Users that are interested in Heterogeneity are comparing it to the libraries listed below
Sorting:
- An R package to plot maps of clone distributions in somatic evolution☆17Updated last year
- ☆47Updated 5 months ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆45Updated last year
- ☆32Updated 6 years ago
- Main repository for Drews et al. (Nature, 2022)☆41Updated last year
- ☆49Updated 10 months ago
- a computational pipeline for the quantification of the Tumor Immune contexture from human RNA-seq data☆18Updated 4 years ago
- Alleloscope is a method for allele-specific copy number estimation that can be applied to single cell DNA and ATAC sequencing data (separ…☆29Updated 2 years ago
- DeCiFer is an algorithm that simultaneously selects mutation multiplicities and clusters SNVs by their corresponding descendant cell frac…☆20Updated last year
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆27Updated 4 years ago
- scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data☆30Updated 2 years ago
- CNApp represents the first web tool to perform a comprehensive and integrative analysis of copy number alterations (CNAs) in a user-frien…☆20Updated 5 years ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆26Updated 8 months ago
- ☆29Updated 6 years ago
- ☆34Updated last year
- ☆34Updated 6 years ago
- mutation(barcode) caller for 10x single cell data☆45Updated 5 years ago
- scRNA-seq cell type identification☆43Updated 5 years ago
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆18Updated 4 years ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated 3 months ago
- scWGCNA☆61Updated 2 years ago
- ☆17Updated last year
- An R package to time somatic mutations☆62Updated 4 years ago
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 4 years ago
- Filtering of PDX samples for mouse derived reads☆28Updated 2 years ago
- ☆18Updated last year
- R package of CSOmap(developing☆14Updated 3 years ago
- ☆40Updated 7 years ago
- Code accompanying "The evolutionary history of 2,658 cancers", Nature 578, 122–128 (2020)☆17Updated 5 years ago
- ☆13Updated 11 months ago