vpc-ccg / svictLinks
Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA
☆28Updated 11 months ago
Alternatives and similar repositories for svict
Users that are interested in svict are comparing it to the libraries listed below
Sorting:
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 7 years ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆29Updated 10 months ago
- Location of public benchmarking; primarily final results☆18Updated 3 months ago
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆27Updated 4 years ago
- Structural variant VCF annotation, duplicate removal and comparison☆33Updated 3 months ago
- PopSTR - A Population based microsatellite genotyper☆33Updated last year
- Microsatellite instability (MSI) detection for cfDNA samples.☆19Updated 4 years ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago
- Copy Number Variation Detection In Next-generation sequencing Gene panels was designed for small (single-exon) copy number variation (CNV…☆21Updated 4 years ago
- Immuological gene typing and annotation for genome assembly☆37Updated 2 months ago
- Viola is a flexible and powerful python package designed specifically for analysis of genomic structural variant (SV) signatures.☆26Updated 10 months ago
- Sample Contamination Estimate from VCF☆19Updated 7 months ago
- ☆40Updated 8 months ago
- VisCap is an open flexible, software program targeted to clinical laboratories for inference and visualization of germline copy number va…☆22Updated 5 years ago
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 3 months ago
- v2.x of the microassembly based somatic variant caller☆23Updated last month
- Integrative analysis of complex structural variants☆21Updated 4 years ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆32Updated last year
- A new tool to infer sex from massively parallel sequencing data.☆17Updated 3 weeks ago
- This repo is be archived, these workflows are still housed housed in the GATK repository under the scripts directory. The workflows are a…☆21Updated 5 years ago
- A variant caller for the GBA gene using WGS data☆22Updated 10 months ago
- A tool for sample swap identification in high throughput sequencing studies☆10Updated 3 months ago
- Reproducibility workflow for Gigante et al., 2018: Using long-read sequencing to detect imprinted DNA methylation☆23Updated 6 years ago
- Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets☆37Updated 4 years ago
- heuristics to merge structural variant calls in VCF format.☆36Updated 8 years ago
- Scripts and files used in the generation of the COLO829 somatic SV truthset.☆13Updated 3 years ago
- filtering trio-based genetic variants in VCFs for clinical review☆21Updated 4 years ago
- ☆18Updated last month
- Structural variant (SV) analysis tools☆36Updated 11 months ago
- ☆24Updated 9 months ago