Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA
☆29Jun 6, 2024Updated last year
Alternatives and similar repositories for svict
Users that are interested in svict are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆27Oct 6, 2020Updated 5 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25May 2, 2018Updated 8 years ago
- v2.x of the microassembly based somatic variant caller☆28May 6, 2026Updated 2 weeks ago
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆20Updated this week
- This repository contains the source code of the revised version of MutPanning. MutPanning is publicly available under the BSD3-Clause ope…☆13Nov 12, 2019Updated 6 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Repo that aids in the detection of microsatellite instabilities (MSI) from sequencing data☆21Apr 22, 2024Updated 2 years ago
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆40Jun 6, 2023Updated 2 years ago
- Accucopy is a computational method that infers Allele-Specific Copy Number alterations from low-coverage low-purity tumor sequencing data…☆17Mar 6, 2024Updated 2 years ago
- Structural variant pipeline☆18Jun 25, 2020Updated 5 years ago
- BitMapperBS: a fast and accurate read aligner for whole-genome bisulfite sequencing☆31Sep 15, 2019Updated 6 years ago
- Efficient C functions to compute the summary statistics (flagstats) for sequencing read sets.☆15Dec 16, 2019Updated 6 years ago
- ☆13Sep 24, 2025Updated 8 months ago
- ClassifyCNV: a tool for clinical annotation of copy-number variants☆73Jun 26, 2023Updated 2 years ago
- Deep learning-based structural variant filtering method☆40Nov 19, 2023Updated 2 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- iAnnotateSV is a Python library and command-line software toolkit to annotate and visualize structural variants detected from Next Genera…☆16Dec 31, 2025Updated 4 months ago
- Microassembly based somatic variant caller for NGS data☆154Jun 23, 2022Updated 3 years ago
- Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.☆160Feb 12, 2026Updated 3 months ago
- igv.js standalone page generator and automatic configuration to view bam/cram/vcf/bed. "working in under 1 minute"☆133Oct 14, 2025Updated 7 months ago
- A tool to detect tissue- and cancer- specific epigenetic signatures in WGS data of liquid biopsies☆10Mar 30, 2023Updated 3 years ago
- ☆29Feb 17, 2021Updated 5 years ago
- Alignment-free detection of structural variations and viral integrations in circulating tumor DNA☆17Nov 11, 2021Updated 4 years ago
- Fast and accurate gene fusion detection from RNA-Seq data☆269Sep 21, 2025Updated 8 months ago
- Targeted and non-targeted anticancer drugs and drug regimens☆31Mar 23, 2026Updated 2 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- BAM Statistics, Feature Counting and Annotation☆154May 8, 2026Updated 2 weeks ago
- MicrOSAtellite Instability Classifier☆15Apr 27, 2026Updated 3 weeks ago
- ☆16Aug 8, 2025Updated 9 months ago
- Official code repository for JAX-CNV☆14Jan 16, 2020Updated 6 years ago
- Integrative analysis of structural variations.☆41Dec 20, 2023Updated 2 years ago
- ☆22Feb 5, 2025Updated last year
- Query language for filtering SAM/BAM reads☆31Oct 15, 2024Updated last year
- All-FIT - Allele-Frequency-based Imputation of Tumor Purity☆18Oct 5, 2019Updated 6 years ago
- RNA mapping pipeline☆19Jun 3, 2018Updated 7 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Efficient base quality score recalibrator for NGS data☆24Nov 28, 2015Updated 10 years ago
- Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.☆209Mar 20, 2024Updated 2 years ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Dec 8, 2020Updated 5 years ago
- Mutation detection using GATK4 best practices and latest RNA editing filters resources. Works with both Hg38 and Hg19☆79Jan 13, 2026Updated 4 months ago
- Detection and Visualization of Exon-Level Copy Number Variants in Targeted Next Generation Sequencing Data☆18Nov 26, 2021Updated 4 years ago
- Data visualization and analysis framework focused on phenotype-molecular data integration at cohort level.☆48May 17, 2026Updated last week
- DeeNA Zip (SAM/BAM compression tool)☆13May 25, 2019Updated 6 years ago