getzlab / CLUMPS-PTMLinks
CLUMPS adapted to post-translational modifications.
☆10Updated 5 months ago
Alternatives and similar repositories for CLUMPS-PTM
Users that are interested in CLUMPS-PTM are comparing it to the libraries listed below
Sorting:
- TCRconv is a deep learning model for predicting recognition between T cell receptors and epitopes. It uses protBERT embeddings for the TC…☆25Updated 3 years ago
- A toolkit for optimal workflow recommendation for proteomics data differential expression analysis☆18Updated last year
- ☆17Updated 2 years ago
- flexible CDR based distance metrics☆67Updated last year
- Code related to the Celligner manuscript☆46Updated 5 years ago
- ☆30Updated 4 months ago
- ☆18Updated last month
- Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networks☆29Updated 6 months ago
- ☆24Updated last month
- ☆18Updated 3 years ago
- ☆44Updated last year
- DIABLO - an integrative multi-group, multi-dataset classification method☆26Updated 6 years ago
- ☆40Updated 5 years ago
- Knowledge-primed neural networks☆38Updated 2 years ago
- A shiny-based web tool for interactive analysis of DepMap data☆24Updated 4 years ago
- Deep Learning Method to Identify Cancer Associated TCRs☆47Updated 3 years ago
- ACTIONet single-cell analysis framework☆42Updated last year
- Compute generation probabilities of CDR3 amino acid and nucleotide sequences☆62Updated 4 years ago
- 🏺 Exploring novel tumor epitope identification☆36Updated 5 years ago
- Functional Embedding of Gene Signatures☆46Updated last year
- model-based understanding of single-cell CRISPR screening☆25Updated 10 months ago
- Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …☆55Updated 5 months ago
- HLA-II ligand predictor.☆45Updated 2 years ago
- Prize-Collecting Steiner Forests for Interactomes☆62Updated last year
- repository containing analysis scripts and auxiliary files☆36Updated 5 years ago
- ExplaiNN: interpretable and transparent neural networks for genomics☆49Updated 6 months ago
- MONET : MOdularising NEtwork Toolbox - https://doi.org/10.1093/bioinformatics/btaa236☆47Updated 4 years ago
- ☆27Updated 6 months ago
- Stitchr - a Python script to stitch together coding TCR nucleotide sequences from V, J, and CDR3 info☆59Updated 2 months ago
- ☆38Updated last year