getzlab / CLUMPS-PTMLinks
CLUMPS adapted to post-translational modifications.
☆10Updated 8 months ago
Alternatives and similar repositories for CLUMPS-PTM
Users that are interested in CLUMPS-PTM are comparing it to the libraries listed below
Sorting:
- TCRconv is a deep learning model for predicting recognition between T cell receptors and epitopes. It uses protBERT embeddings for the TC…☆26Updated 3 years ago
- ☆18Updated last month
- DIABLO - an integrative multi-group, multi-dataset classification method☆26Updated 6 years ago
- A shiny-based web tool for interactive analysis of DepMap data☆24Updated 4 years ago
- MONET : MOdularising NEtwork Toolbox - https://doi.org/10.1093/bioinformatics/btaa236☆48Updated 4 years ago
- ☆41Updated 5 years ago
- A toolkit for optimal workflow recommendation for proteomics data differential expression analysis☆19Updated last year
- Knowledge-primed neural networks☆38Updated 2 years ago
- HLA-II ligand predictor.☆46Updated 2 years ago
- Seq2Neo: a comprehensive pipeline for cancer neoantigen immunogenicity prediction☆22Updated 2 years ago
- ☆18Updated 4 years ago
- Functional Embedding of Gene Signatures☆48Updated last year
- Compute generation probabilities of CDR3 amino acid and nucleotide sequences☆63Updated 2 months ago
- Deep Learning Method to Identify Cancer Associated TCRs☆46Updated 3 years ago
- ☆31Updated 7 months ago
- ☆38Updated 2 years ago
- flexible CDR based distance metrics☆69Updated last month
- Code related to the Celligner manuscript☆46Updated 5 years ago
- immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.☆73Updated last week
- Computational Optimization of DNA Activity (CODA)☆67Updated 9 months ago
- ExplaiNN: interpretable and transparent neural networks for genomics☆49Updated 9 months ago
- ☆17Updated 2 years ago
- ☆11Updated 6 years ago
- ☆28Updated 9 months ago
- ☆19Updated last year
- TCRGP, a novel Gaussian process method that can predict if TCRs recognize certain epitopes. This method can utilize different CDR sequenc…☆30Updated 3 years ago
- ☆45Updated 2 years ago
- 🏺 Exploring novel tumor epitope identification☆38Updated 5 years ago
- NetTCR-2.0. Sequence-based prediction of peptide-TCR binding☆35Updated 3 years ago
- bioinformatics plotting and tools☆60Updated last year