Alternatives and similar repositories for CLUMPS-PTM:

Users that are interested in CLUMPS-PTM are comparing it to the libraries listed below

• getzlab / CPTAC_PanCan_PTM_2023
  ☆16Updated last year
• lanagarmire / Asgard
  ☆41Updated last year
• emmijokinen / TCRconv
  TCRconv is a deep learning model for predicting recognition between T cell receptors and epitopes. It uses protBERT embeddings for the TC…
  ☆23Updated 2 years ago
• interactivereport / RNASequest
  ☆18Updated last month
• Teichlab / drug2cell
  Gene group activity utility functions for Scanpy
  ☆67Updated 2 months ago
• hart-lab / drugz
  DRUGZ software
  ☆23Updated 3 years ago
• angelettilab / scMouseBcellFlu
  ☆18Updated 3 years ago
• KarchinLab / HotMAPS_2016
  Detects hotspot regions for somatic mutations in 3D protein structures
  ☆2Updated 11 months ago
• MiraldiLab / maxATAC
  Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networks
  ☆27Updated last week
• IdoSpringer / ERGO-II
  ERGO-II, an updated version of ERGO including more features for TCR-peptide binding prediction
  ☆29Updated 2 years ago
• kenichi-shimada / shinyDepMap
  A shiny-based web tool for interactive analysis of DepMap data
  ☆23Updated 4 years ago
• aertslab / GENIE3
  GENIE3 (GEne Network Inference with Ensemble of trees) R-package
  ☆30Updated 2 years ago
• singha53-zz / diablo
  DIABLO - an integrative multi-group, multi-dataset classification method
  ☆22Updated 5 years ago
• broadinstitute / Celligner_ms
  Code related to the Celligner manuscript
  ☆45Updated 4 years ago
• zhouzilu / cTPnet
  cTPnet Package
  ☆24Updated 2 years ago
• andrewrech / antigen.garnish
  ☆47Updated 2 years ago
• decomverse / ACTIONet
  ACTIONet single-cell analysis framework
  ☆38Updated 5 months ago
• IEDB / TCRMatch
  ☆28Updated 2 months ago
• MarieOestreich / hCoCena
  ☆16Updated this week
• saezlab / cosmosR
  COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data…
  ☆59Updated 6 months ago
• sjgosai / boda2
  Computational Optimization of DNA Activity (CODA)
  ☆55Updated last month
• alexyermanos / Platypus
  R package for the analysis of single-cell immune repertoires
  ☆42Updated 2 weeks ago
• cistrome / MIRA
  Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.
  ☆60Updated 9 months ago
• brianhie / geosketch
  Geometry-preserving random sampling
  ☆78Updated 3 months ago
• antigenomics / tcren-ms
  📝 [Paper] TCRen: predicting TCR-peptide recognition based on residue-level pairwise statistical potential
  ☆16Updated last month
• liulab-dfci / lisa2
  ☆29Updated 2 years ago
• cartal / HCA_Heart
  This is the official repository for the Human Cell Atlas Heart project.
  ☆29Updated 4 years ago
• KChen-lab / METAFlux
  ☆57Updated 7 months ago
• XSLiuLab / Seq2Neo
  Seq2Neo: a comprehensive pipeline for cancer neoantigen immunogenicity prediction
  ☆21Updated 2 years ago
• josephreplogle / guide_calling
  Tools for sgRNA calling in direct capture Perturb-seq data
  ☆32Updated last year