Alternatives and similar repositories for blobtoolkit

Users that are interested in blobtoolkit are comparing it to the libraries listed below

• marschall-lab / panacus
  Panacus is a tool for computing statistics for GFA-formatted pangenome graphs
  ☆102Updated 2 months ago
• rhysf / Synima
  Synteny Imager
  ☆62Updated 8 months ago
• dwinter / pafr
  Read, manipulate and visualize 'Pairwise mApping Format' data in R
  ☆74Updated 4 years ago
• bonsai-team / Porechop_ABI
  Adapter trimmer for Oxford Nanopore reads using ab initio method
  ☆40Updated 5 months ago
• DessimozLab / FastOMA
  FastOMA is a scalable software package to infer orthology relationship.
  ☆76Updated last month
• Gaius-Augustus / TSEBRA
  TSEBRA: Transcript Selector for BRAKER
  ☆47Updated 6 months ago
• rjchallis / assembly-stats
  Assembly statistic visualisation
  ☆90Updated last year
• tbenavi1 / genomescope2.0
  Reference-free profiling of polyploid genomes
  ☆115Updated 10 months ago
• bhattlab / lathe
  A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing
  ☆70Updated 3 years ago
• rrwick / Minipolish
  A tool for Racon polishing of miniasm assemblies
  ☆74Updated 4 years ago
• vgl-hub / gfastats
  A single fast and exhaustive tool for summary statistics and simultaneous *fa* (fasta, fastq, gfa [.gz]) genome assembly file manipulatio…
  ☆102Updated last week
• RemiAllio / MitoFinder
  MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data
  ☆102Updated last year
• rrwick / Autocycler
  A tool for generating consensus long-read assemblies for bacterial genomes
  ☆127Updated last week
• gbouras13 / dnaapler
  Reorients assembled microbial sequences
  ☆117Updated last month
• colindaven / awesome-pangenomes
  A list of software for pangenomics
  ☆112Updated this week
• avierstr / amplicon_sorter
  Sorts amplicons from Nanopore sequencing data based on similarity
  ☆37Updated 2 months ago
• KolmogorovLab / hapdup
  Pipeline to convert a haploid assembly into diploid
  ☆100Updated 3 months ago
• DessimozLab / OMArk
  ☆73Updated 2 months ago
• epi2me-labs / wf-metagenomics
  Metagenomic classification of long-read sequencing data
  ☆83Updated this week
• JustinChu / JupiterPlot
  A Circos-based tool to visualize genome assembly consistency or synteny between assemblies.
  ☆80Updated 5 months ago
• kiranbandi / synvisio
  SynVisio is an interactive multiscale visualization tool that lets you explore the results of McScanX a popular synteny and collinearity …
  ☆83Updated last year
• jamiemcg / BUSCO_phylogenomics
  BUSCO Phylogenomics | Utility script to construct species phylogenies using BUSCO proteins
  ☆66Updated 7 months ago
• harvardinformatics / GenomeAnnotation
  Best practices and workflow for genome annotation
  ☆77Updated last month
• metagenlab / mummer2circos
  Circular bacterial genome plots based on BLAST or NUCMER/PROMER alignments
  ☆104Updated last year
• PombertLab / SYNY
  The SYNY pipeline investigates synteny between species by reconstructing protein clusters from gene pairs.
  ☆42Updated last month
• filip-husnik / pseudofinder
  Detection of pseudogene candidates in bacterial and archaeal genomes.
  ☆49Updated last year
• huangnengCSU / compleasm
  A genome completeness evaluation tool based on miniprot
  ☆211Updated last week
• MetazoaPhylogenomicsLab / FANTASIA
  ☆26Updated last month
• bcgsc / ntSynt
  Detecting multi-genome synteny using minimizer graph mapping
  ☆78Updated 2 weeks ago
• rrwick / Bacsort
  a collection of scripts for organising bacterial genomes by species
  ☆76Updated 3 years ago