Interactive quality assessment of genome assemblies
☆129Aug 5, 2026Updated last month
Alternatives and similar repositories for blobtoolkit
Users that are interested in blobtoolkit are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A genome completeness evaluation tool based on miniprot☆267Aug 17, 2026Updated last month
- Detecting multi-genome synteny using minimizer graph mapping☆116Updated this week
- Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets☆216Aug 21, 2024Updated 2 years ago
- Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).☆118Jul 23, 2024Updated 2 years ago
- Find, circularise and annotate mitogenome from PacBio assemblies☆201May 11, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Improvement of Long Read Assemblies (ILRA) is a pipeline to help in the post assembly process (finishing) by cleaning and merging contigs…☆13Aug 24, 2026Updated 3 weeks ago
- haplotypic duplication identification tool☆295Oct 30, 2025Updated 10 months ago
- Tool to plot synteny and structural rearrangements between genomes☆355Jul 27, 2026Updated last month
- k-mer based assembly evaluation☆355Jul 6, 2026Updated 2 months ago
- An accurate GFF3/GTF lift over pipeline☆557Aug 1, 2023Updated 3 years ago
- Eukaryotic Genome Annotation Pipeline☆400Updated this week
- Synteny and Rearrangement Identifier☆489Jul 1, 2026Updated 2 months ago
- Chromosome-level scaffolding using multiple references☆170Sep 8, 2024Updated 2 years ago
- Inference of ploidy and heterozygosity structure using whole genome sequencing data☆301Sep 3, 2026Updated 2 weeks ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Fast genome analysis from unassembled short reads☆327Apr 8, 2024Updated 2 years ago
- A single fast and exhaustive tool for summary statistics and simultaneous *fa* (fasta, fastq, gfa [.gz]) genome assembly file manipulatio…☆131Jun 18, 2026Updated 3 months ago
- Tools for fast and flexible genome assembly scaffolding and improvement☆576Feb 14, 2024Updated 2 years ago
- A genome assembly assessment pipeline.☆39Jun 5, 2026Updated 3 months ago
- An assembly workflow for analysing data in the Earth Biogenome Project pilot project.☆19Aug 20, 2026Updated last month
- Identify and find telomeres, or telomeric repeats in a genome.☆176Nov 24, 2025Updated 9 months ago
- ☆261Sep 13, 2026Updated last week
- Generate an interactive dot plot from mummer or minimap alignments☆220Jan 17, 2024Updated 2 years ago
- quality filtering tool for long reads☆416Sep 17, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Reorients assembled microbial sequences☆146Jun 30, 2026Updated 2 months ago
- FastK based version of Merqury☆33Jan 19, 2026Updated 8 months ago
- MetaEuk - sensitive, high-throughput gene discovery and annotation for large-scale eukaryotic metagenomics☆211Sep 8, 2026Updated last week
- Linear-time de novo Long Read Assembler☆43Mar 19, 2026Updated 6 months ago
- De-Novo Repeat Discovery Tool☆245Sep 4, 2026Updated 2 weeks ago
- A gap-closing software tool that uses long reads to enhance genome assembly.☆250Sep 6, 2024Updated 2 years ago
- GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the sc…☆149Apr 13, 2026Updated 5 months ago
- ☆33Jul 9, 2024Updated 2 years ago
- A Circos-based tool to visualize genome assembly consistency or synteny between assemblies.☆98Nov 23, 2024Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Nextflow DSL2 pipeline to align short and long reads to genome assembly. This workflow is part of the Tree of Life production suite.☆20Updated this week
- Align proteins to genomes with splicing and frameshift☆420Jan 5, 2026Updated 8 months ago
- Code to create a PRG from a Multiple Sequence Alignment file☆25Sep 10, 2025Updated last year
- Yet another Hi-C scaffolding tool☆183Nov 4, 2024Updated last year
- Create a tree using Mash distances☆190Oct 24, 2023Updated 2 years ago
- Mabs, a genome assembly tool that optimizes parameters of Hifiasm and Flye☆37Apr 20, 2026Updated 5 months ago
- Tetemer, an R package and Shiny app for interactively fitting population parameters to k-mer spectra of diploids, triploids, and tetraplo…☆16Jul 30, 2026Updated last month