formbio / FLAG
☆31Updated 7 months ago
Alternatives and similar repositories for FLAG:
Users that are interested in FLAG are comparing it to the libraries listed below
- A shiny application to visualize MCscan result☆34Updated 2 years ago
- ☆76Updated 4 months ago
- Yet another Hi-C scaffolding tool☆19Updated 3 months ago
- Genome Annotation Pipeline☆35Updated 6 months ago
- ☆32Updated 4 years ago
- Computational Analysis of Gene Expression Evolution☆36Updated this week
- Chromosome-level synteny plotting using orthologous regions☆29Updated 5 months ago
- PSAURON is a machine learning model for rapid assessment of protein coding gene annotation☆31Updated last month
- A Nextflow pipeline for evaluating assembly quality☆28Updated 2 months ago
- Data analysis of Funannotate and Orthofinder outputs to Pangenome results☆19Updated 4 years ago
- A high performance tool to identify orthologs and paralogs across genomes.☆26Updated last year
- Tiberius is a deep learning gene finder.☆48Updated this week
- PlantTribes is a collection of automated gene family analysis pipelines for comparative plant genomics☆35Updated last year
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆31Updated 3 years ago
- EnTAP is moving to GitLab for future changes https://gitlab.com/PlantGenomicsLab/EnTAP☆38Updated 3 weeks ago
- Wrapper for the genoPlotR R package. This wrapper makes phylogeny, genbank files and blast comparisons that is needed for the genoPLotR p…☆14Updated 3 years ago
- methods for orphan gene prediction paper optimization☆25Updated 3 years ago
- This is the standalone version of the EviAnn pipeline☆25Updated 2 weeks ago
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆73Updated 2 months ago
- TSEBRA: Transcript Selector for BRAKER☆47Updated 3 months ago
- Dinoflagellate Annotation Workflow☆13Updated 2 years ago
- STAG: Species Tree from All Genes☆33Updated 6 years ago
- kmerfreq count K-mer (with size K) frequency from the input sequence data, typically sequencing reads data, and refe rence genome data is…☆17Updated 4 years ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆52Updated last year
- BITACORA: A Bioinformatics tool for gene family annotation☆43Updated 10 months ago
- A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes☆30Updated 10 months ago
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆35Updated last month
- Mabs, a genome assembly tool which optimizes parameters of Hifiasm and Flye☆29Updated 2 months ago
- ☆31Updated 3 months ago
- Accompanying repository for our publications on manual curation methods for Transposable Elements.☆20Updated 7 months ago