☆33Jul 9, 2024Updated 2 years ago
Alternatives and similar repositories for FLAG
Users that are interested in FLAG are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Nextflow pipeline for genome annotation of protein-coding genes☆16Dec 21, 2023Updated 2 years ago
- Whole genome visualization and comparative genomics in R☆24Feb 18, 2025Updated last year
- TSEBRA: Transcript Selector for BRAKER☆49Apr 7, 2026Updated 3 months ago
- Mabs, a genome assembly tool that optimizes parameters of Hifiasm and Flye☆37Apr 20, 2026Updated 3 months ago
- A genome completeness evaluation tool based on miniprot☆254Jun 20, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Detecting transposable element invasions without repeat library. Detects also horizontal transfer events and endogenized viruses. All you…☆17Nov 25, 2024Updated last year
- BITACORA: A Bioinformatics tool for gene family annotation☆55Dec 10, 2025Updated 7 months ago
- GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the sc…☆149Apr 13, 2026Updated 3 months ago
- Tree House Explorer (THEx) is a novel genome browser for exploring phylogenetic and genomic data in one succinct place.☆15Jan 29, 2024Updated 2 years ago
- SINE annotation tool for plant genomes☆19Jan 21, 2024Updated 2 years ago
- This is the standalone version of the EviAnn pipeline☆175Jun 24, 2026Updated 3 weeks ago
- A comparative genomics workflow using Nextflow, conda, Julia and R☆50Apr 24, 2024Updated 2 years ago
- Improved long-read assembly by preserving contained reads☆30Aug 22, 2024Updated last year
- a multiple sequence alignment-trimming algorithm for accurate phylogenomic inference☆90Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆27Updated this week
- Paired REad TEXTure Mapper. Converts SAM formatted read pairs into genome contact maps.☆28Updated this week
- Best practices and workflow for genome annotation☆78Apr 14, 2025Updated last year
- TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annot…☆208Nov 23, 2025Updated 7 months ago
- HELIANO is a software for detection and classification of Helitron-like elements.☆34Jul 13, 2026Updated last week
- TR annotation tool VAMPIRE☆19Jun 22, 2026Updated 3 weeks ago
- Improvement of Long Read Assemblies (ILRA) is a pipeline to help in the post assembly process (finishing) by cleaning and merging contigs…☆13Apr 21, 2026Updated 3 months ago
- Generating UTRs from SHort Reads☆12Sep 28, 2020Updated 5 years ago
- Eukaryotic Genome Annotation Pipeline-External caller scripts and documentation☆202Apr 27, 2026Updated 2 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- TD2☆41May 17, 2026Updated 2 months ago
- PoSeiDon: positive selection detection and recombination analysis pipeline☆40Sep 22, 2025Updated 9 months ago
- Some components that speed up and reduce resource cost for original ALLHiC☆15Jun 21, 2025Updated last year
- Tree reconstruction of ancestry using incomplete lineage sorting☆11Jan 9, 2026Updated 6 months ago
- A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes☆30Apr 10, 2024Updated 2 years ago
- Programs implementing the trio-binning genome assembly method☆21Nov 22, 2023Updated 2 years ago
- ☆45Dec 11, 2025Updated 7 months ago
- BOSTIn is a new, user-friendly phylogenetic artifact identification package.☆12Jul 11, 2026Updated last week
- ☆91Jun 26, 2026Updated 3 weeks ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆41Jun 8, 2023Updated 3 years ago
- HiC-Hiker: A probabilistic model to determine contig orientation in chromosome-length scaffolds with Hi-C☆26Jan 14, 2021Updated 5 years ago
- Tiberius is a deep learning gene finder.☆125Updated this week
- Yet another Hi-C scaffolding tool☆181Nov 4, 2024Updated last year
- Strand and WGD aware syntenic gene identification☆16Oct 16, 2025Updated 9 months ago
- Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).☆112Jul 23, 2024Updated last year
- haplotypic duplication identification tool☆291Oct 30, 2025Updated 8 months ago