formbio / FLAG
☆22Updated 2 months ago
Related projects: ⓘ
- Improved Phased Assembler☆27Updated 2 years ago
- Genome-Genome circle synteny☆22Updated 9 months ago
- R package for comparison of synteny conservation at the genome-wide scale.☆13Updated 3 months ago
- methods for orphan gene prediction paper optimization☆25Updated 2 years ago
- scripts to parse and analyse MCScanX collinearity output☆29Updated 4 years ago
- Dinoflagellate Annotation Workflow☆11Updated last year
- The SYNY pipeline investigates synteny between species by reconstructing protein clusters from gene pairs.☆29Updated 2 weeks ago
- A high performance tool to identify orthologs and paralogs across genomes.☆27Updated last year
- These are scripts that I use frequently in genome annotation projects. Some of them have evolved awkwardly so the code is difficult to fo…☆15Updated 6 years ago
- scripts for sequence and feature conversion, annotation, analysis ...☆25Updated 5 months ago
- Eukaryotic Non-Model Transcriptome Annotation Pipeline - Latest Release v1.4.0 - Revamped final graphics coming soon!☆37Updated this week
- Yet another Hi-C scaffolding tool☆19Updated last year
- A box of genomics tools☆21Updated 4 years ago
- Compute N50/NG50 and auN/auNG☆31Updated 11 months ago
- HyPhy standalone analyses☆37Updated 3 months ago
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆35Updated 7 months ago
- ☆32Updated 3 years ago
- ☆51Updated this week
- Likelihood-based Selective Sweep Detection☆35Updated 11 months ago
- STAG: Species Tree from All Genes☆31Updated 5 years ago
- This is the standalone version of the EviAnn pipeline☆15Updated 2 weeks ago
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆57Updated this week
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆47Updated last year
- a broadly applicable tool for automated gene identification and retrieval☆28Updated 2 months ago
- kmerfreq count K-mer (with size K) frequency from the input sequence data, typically sequencing reads data, and refe rence genome data is…☆15Updated 4 years ago
- ☆23Updated 3 years ago
- Small and simple scripts useful for various bioinformatics purposes e.g. extract sequences from fasta files☆19Updated last year
- read and analyse RepeatMasker output☆23Updated last year
- ☆27Updated last year
- ☆24Updated 2 years ago