nextgenusfs / funannotate
Eukaryotic Genome Annotation Pipeline
☆346Updated last month
Alternatives and similar repositories for funannotate:
Users that are interested in funannotate are comparing it to the libraries listed below
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆400Updated 3 months ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆320Updated 11 months ago
- Pilon is an automated genome assembly improvement and variant detection tool☆361Updated 3 years ago
- Tools for fast and flexible genome assembly scaffolding and improvement☆505Updated last year
- Tool to plot synteny and structural rearrangements between genomes☆303Updated 3 weeks ago
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆227Updated 4 years ago
- An updated pipeline for pangenome investigation☆296Updated 2 months ago
- quality filtering tool for long reads☆329Updated last year
- RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.☆251Updated last week
- KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files☆337Updated last year
- TransDecoder source☆288Updated 7 months ago
- NCBI Prokaryotic Genome Annotation Pipeline☆335Updated this week
- Bacterial ribosomal RNA predictor☆242Updated last year
- MCScanX: Multiple Collinearity Scan toolkit X version. The most popular synteny analysis tool in the world!☆254Updated 4 months ago
- Scan contig files against PubMLST typing schemes☆223Updated 2 years ago
- Synteny and Rearrangement Identifier☆378Updated this week
- adapter trimmer for Oxford Nanopore reads☆358Updated 11 months ago
- ☆206Updated 3 months ago
- A tool to circularize genome assemblies☆241Updated last year
- Fast and accurate de novo assembler for long reads☆389Updated 11 months ago
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆505Updated last month
- Any Way to Show Multi genomic Synteny☆185Updated last week
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆370Updated 8 months ago
- SortMeRNA: next-generation sequence filtering and alignment tool☆262Updated 4 months ago
- the pangenome graph builder☆426Updated this week
- A user-friendly workflow for phylogenomics☆212Updated 2 weeks ago
- Rapid comparison and dereplication of genomes☆285Updated 3 weeks ago
- Fast and accurately polish the genome generated by long reads.☆222Updated 3 months ago
- Genome Assembly and Annotation Service code☆211Updated last year
- Assembly and binning of metagenomes☆235Updated this week