JustinChu / JupiterPlotLinks
A Circos-based tool to visualize genome assembly consistency or synteny between assemblies.
☆86Updated 10 months ago
Alternatives and similar repositories for JupiterPlot
Users that are interested in JupiterPlot are comparing it to the libraries listed below
Sorting:
- Synteny Imager☆64Updated 2 months ago
- Pipeline to convert a haploid assembly into diploid☆103Updated 8 months ago
- ☆66Updated last month
- Interactive quality assessment of genome assemblies☆109Updated 4 months ago
- ☆117Updated 2 weeks ago
- Hybrid error correction of long reads using colored de Bruijn graphs☆104Updated last month
- Assembly statistic visualisation☆90Updated last year
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆111Updated last month
- TSEBRA: Transcript Selector for BRAKER☆48Updated 10 months ago
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆74Updated 4 years ago
- A tool for Racon polishing of miniasm assemblies☆77Updated last month
- Call select base modifications in PacBio HiFi reads☆13Updated 8 months ago
- A list of software for pangenomics☆131Updated 2 weeks ago
- A short analysis of Oxford Nanopore consensus accuracy for bacterial genome assemblies☆60Updated 6 years ago
- Generates an NCBI .tbl file of annotations on a genome.☆68Updated 7 years ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆58Updated 2 years ago
- k-mer learning materials☆80Updated 7 months ago
- ☆141Updated 5 months ago
- ONT assembly and Illumina polishing pipeline☆89Updated 4 years ago
- ☆79Updated 4 years ago
- Simple pileup-based variant caller☆92Updated 5 months ago
- Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish☆57Updated 2 years ago
- MUM&Co is a simple bash script that uses Whole Genome Alignment information provided by MUMmer (only v4) to detect Structural Variation☆73Updated last month
- ☆44Updated 8 years ago
- LRSDAY: Long-read Sequencing Data Analysis for Yeasts☆32Updated last year
- Adapter trimmer for Oxford Nanopore reads using ab initio method☆52Updated 10 months ago
- A fast tool for hybrid genome assembly of long and short reads☆78Updated 5 years ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆76Updated 9 years ago
- Splitting of sequence reads by internal adapter sequence search☆51Updated 2 years ago
- qcat is a Python command-line tool for demultiplexing Oxford Nanopore reads from FASTQ files.☆81Updated 4 years ago