JustinChu / JupiterPlotLinks
A Circos-based tool to visualize genome assembly consistency or synteny between assemblies.
☆80Updated 7 months ago
Alternatives and similar repositories for JupiterPlot
Users that are interested in JupiterPlot are comparing it to the libraries listed below
Sorting:
- ☆62Updated last week
- TSEBRA: Transcript Selector for BRAKER☆47Updated 7 months ago
- Synteny Imager☆62Updated 10 months ago
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆74Updated 4 years ago
- Pipeline to convert a haploid assembly into diploid☆100Updated 5 months ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆57Updated 2 years ago
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆110Updated last week
- ☆44Updated 8 years ago
- Few scripts facilitating the extraction of info from Repeat Masker .out files☆80Updated 4 years ago
- Splitting of sequence reads by internal adapter sequence search☆51Updated 2 years ago
- ☆116Updated last month
- Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish☆57Updated 2 years ago
- Tools for working with second gen assemblies, fasta sequences, etc☆93Updated 8 years ago
- A tool for Racon polishing of miniasm assemblies☆76Updated 3 weeks ago
- ☆116Updated last week
- Wally: Visualization of aligned sequencing reads and contigs☆118Updated 2 months ago
- Simple pileup-based variant caller☆90Updated 2 months ago
- ☆77Updated 5 years ago
- Evaluate variant calls and its combination with k-mer multiplicity☆67Updated 2 years ago
- Call select base modifications in PacBio HiFi reads☆7Updated 4 months ago
- A organelle de novo genome assembly toolkit☆60Updated 4 months ago
- A program to call variants from genome alignment☆80Updated last month
- A program for assessing the T2T genome continuity☆79Updated last week
- Conditional Reciprocal Best Blast☆41Updated 8 years ago
- A tool for evaluate long-read de novo assembly results☆47Updated 9 months ago
- Reference-free profiling of polyploid genomes☆117Updated 2 weeks ago
- MUM&Co is a simple bash script that uses Whole Genome Alignment information provided by MUMmer (only v4) to detect Structural Variation☆70Updated 2 months ago
- A local-haplotagging-based small and structural variant caller☆78Updated last month
- Same species annotation lift over pipeline.☆97Updated last year
- Genome Annotation Without Nightmares☆45Updated 5 months ago