Alternatives and similar repositories for JupiterPlot:

Users that are interested in JupiterPlot are comparing it to the libraries listed below

• KolmogorovLab / hapdup
  Pipeline to convert a haploid assembly into diploid
  ☆100Updated 2 months ago
• daewoooo / SVbyEye
  ☆77Updated 3 weeks ago
• kjenike / panagram
  ☆61Updated last week
• dwinter / pafr
  Read, manipulate and visualize 'Pairwise mApping Format' data in R
  ☆71Updated 3 years ago
• rhysf / Synima
  Synteny Imager
  ☆60Updated 6 months ago
• marschall-lab / panacus
  Panacus is a tool for computing statistics for GFA-formatted pangenome graphs
  ☆99Updated last week
• nanoporetech / ont-assembly-polish
  ONT assembly and Illumina polishing pipeline
  ☆91Updated 4 years ago
• tobiasrausch / wally
  Wally: Visualization of aligned sequencing reads and contigs
  ☆113Updated 3 months ago
• lh3 / minipileup
  Simple pileup-based variant caller
  ☆88Updated last month
• Gaius-Augustus / TSEBRA
  TSEBRA: Transcript Selector for BRAKER
  ☆47Updated 4 months ago
• colindaven / awesome-pangenomes
  A list of software for pangenomics
  ☆107Updated 2 weeks ago
• rrwick / Minipolish
  A tool for Racon polishing of miniasm assemblies
  ☆74Updated 4 years ago
• nanoporetech / duplex-tools
  Splitting of sequence reads by internal adapter sequence search
  ☆51Updated last year
• liangclab / HERA
  ☆76Updated 5 years ago
• mapleforest / HaploMerger2
  ☆43Updated 8 years ago
• genomeannotation / GAG
  Generates an NCBI .tbl file of annotations on a genome.
  ☆66Updated 7 years ago
• rrwick / August-2019-consensus-accuracy-update
  A short analysis of Oxford Nanopore consensus accuracy for bacterial genome assemblies
  ☆59Updated 5 years ago
• josephryan / estimate_genome_size.pl
  Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish
  ☆56Updated 2 years ago
• clemgoub / dnaPipeTE
  dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…
  ☆54Updated last year
• rjchallis / assembly-stats
  Assembly statistic visualisation
  ☆89Updated last year
• TF-Chan-Lab / panGraphViewer
  Show pangenome graphs in an easy way
  ☆55Updated 2 years ago
• genomehubs / blobtoolkit
  Interactive quality assessment of genome assemblies
  ☆97Updated this week
• Dfam-consortium / TETools
  Dfam Transposable Element Tools Docker container.
  ☆88Updated last week
• wurmlab / flo
  Same species annotation lift over pipeline.
  ☆96Updated last year
• tbenavi1 / genomescope2.0
  Reference-free profiling of polyploid genomes
  ☆114Updated 8 months ago
• PacificBiosciences / jasmine
  Call select base modifications in PacBio HiFi reads
  ☆2Updated last month
• sujaikumar / assemblage
  Tools for working with second gen assemblies, fasta sequences, etc
  ☆93Updated 8 years ago
• SorenKarst / longread_umi
  ☆76Updated 4 years ago
• arangrhie / merfin
  Evaluate variant calls and its combination with k-mer multiplicity
  ☆66Updated 2 years ago
• bcgsc / ntJoin
  🔗Genome assembly scaffolder using minimizer graphs
  ☆83Updated 5 months ago