JustinChu / JupiterPlotLinks
A Circos-based tool to visualize genome assembly consistency or synteny between assemblies.
☆88Updated last year
Alternatives and similar repositories for JupiterPlot
Users that are interested in JupiterPlot are comparing it to the libraries listed below
Sorting:
- ☆68Updated last week
- Hybrid error correction of long reads using colored de Bruijn graphs☆106Updated 3 months ago
- Pipeline to convert a haploid assembly into diploid☆109Updated 11 months ago
- ☆45Updated 9 years ago
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆76Updated 4 years ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆59Updated 2 years ago
- A tool for Racon polishing of miniasm assemblies☆78Updated 3 months ago
- Simple pileup-based variant caller☆95Updated 8 months ago
- Synteny Imager☆65Updated last week
- A fast tool for hybrid genome assembly of long and short reads☆78Updated 5 years ago
- TSEBRA: Transcript Selector for BRAKER☆49Updated last month
- Call select base modifications in PacBio HiFi reads☆15Updated last month
- k-mer learning materials☆81Updated 10 months ago
- A program for assessing the T2T genome continuity☆92Updated 2 weeks ago
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆116Updated last month
- A local-haplotagging-based small and structural variant caller☆90Updated 2 weeks ago
- Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish☆57Updated 2 years ago
- ⛓ Long Interval Nucleotide K-mer Scaffolder☆74Updated 8 months ago
- Wally: Visualization of aligned sequencing reads and contigs☆120Updated 2 months ago
- Same species annotation lift over pipeline.☆98Updated 2 years ago
- A list of software for pangenomics☆165Updated 2 weeks ago
- Generates an NCBI .tbl file of annotations on a genome.☆68Updated 7 years ago
- MUM&Co is a simple bash script that uses Whole Genome Alignment information provided by MUMmer (only v4) to detect Structural Variation☆75Updated 3 months ago
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆116Updated 3 weeks ago
- ☆144Updated last month
- Evaluate variant calls and its combination with k-mer multiplicity☆67Updated 3 years ago
- Assembly statistic visualisation☆92Updated 2 years ago
- Mapping pipeline for data generated using Arima-HiC☆81Updated last year
- SRF: Satellite Repeat Finder☆101Updated last year
- SynVisio is an interactive multiscale visualization tool that lets you explore the results of McScanX a popular synteny and collinearity …☆93Updated last month