JustinChu / JupiterPlotLinks
A Circos-based tool to visualize genome assembly consistency or synteny between assemblies.
☆90Updated last year
Alternatives and similar repositories for JupiterPlot
Users that are interested in JupiterPlot are comparing it to the libraries listed below
Sorting:
- ☆45Updated 9 years ago
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆77Updated 4 years ago
- Pipeline to convert a haploid assembly into diploid☆111Updated last year
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆59Updated 2 years ago
- Same species annotation lift over pipeline.☆97Updated 2 years ago
- ☆68Updated 2 weeks ago
- Synteny Imager☆65Updated last month
- Hybrid error correction of long reads using colored de Bruijn graphs☆107Updated 2 weeks ago
- A local-haplotagging-based small and structural variant caller☆94Updated 3 weeks ago
- ☆146Updated 3 months ago
- Mapping pipeline for data generated using Arima-HiC☆81Updated last year
- Simple pileup-based variant caller☆95Updated 9 months ago
- Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish☆57Updated 3 years ago
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆105Updated 4 years ago
- Wally: Visualization of aligned sequencing reads and contigs☆121Updated 3 months ago
- Show pangenome graphs in an easy way☆57Updated 6 months ago
- A software to assemble chloroplast and mitochodrial genomes using PacBio data☆40Updated 5 years ago
- SynVisio is an interactive multiscale visualization tool that lets you explore the results of McScanX a popular synteny and collinearity …☆93Updated 2 months ago
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆119Updated this week
- TSEBRA: Transcript Selector for BRAKER☆49Updated 2 months ago
- Splitting of sequence reads by internal adapter sequence search☆51Updated 2 years ago
- SRF: Satellite Repeat Finder☆101Updated 2 years ago
- k-mer learning materials☆83Updated 11 months ago
- MUM&Co uses Whole Genome Alignment information provided by MUMmer (only v4) to detect Structural Variation☆76Updated 3 weeks ago
- Structural Variant Identification Method using Genome Assemblies☆134Updated 3 years ago
- Evaluate variant calls and its combination with k-mer multiplicity☆67Updated 3 years ago
- ☆119Updated 3 months ago
- ☆78Updated 6 years ago
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆120Updated 2 months ago
- A organelle de novo genome assembly toolkit☆73Updated 11 months ago