Alternatives and similar repositories for MiniscopeAnalysis

Users that are interested in MiniscopeAnalysis are comparing it to the libraries listed below

• zivlab / CellReg
  Registration of cells across sessions.
  ☆75Updated last year
• PeyracheLab / miniscoPy
  A package to analyse calcium imaging data recorded with the Miniscope.
  ☆33Updated 3 years ago
• ransona / ROIMatchPub
  Match suite2p ROIs between imaging sessions
  ☆27Updated 6 years ago
• bahanonu / ciatah
  CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…
  ☆95Updated 10 months ago
• JinghaoLu / MIN1PIPE
  A MINiscope 1-photon-based Calcium Imaging Signal Extraction PIPEline.
  ☆62Updated last year
• RichieHakim / ROICaT
  Region Of Interest Classification and Tracking
  ☆25Updated last week
• kushalkolar / MESmerize
  Platform for Calcium Imaging analysis. DEPRECATED.
  ☆62Updated last year
• porteralab / EZcalcium
  Calcium Data Extraction and Analysis
  ☆45Updated 2 years ago
• Whitlock-Group / HERBS
  ☆52Updated last year
• DeNardoLab / BehaviorDEPOT
  Repository for BehaviorDEPOT pipeline app files and source code
  ☆38Updated 11 months ago
• mesoscale-activity-map / map-ephys
  Mesoscale activity ephys ingest schema
  ☆11Updated 2 years ago
• bahanonu / imaging_tools
  A table containing imaging analysis tools for biology, with a focus on calcium imaging.
  ☆52Updated 2 years ago
• NTCColumbia / moco
  motion correction
  ☆17Updated 2 years ago
• petersaj / AP_histology
  Histology processing
  ☆69Updated last week
• denisecailab / minian
  miniscope analysis pipeline with interactive visualizations
  ☆95Updated last year
• HelmchenLabSoftware / Cascade
  Calibrated inference of spiking from calcium ΔF/F data using deep networks
  ☆151Updated 3 weeks ago
• nel-lab / mesmerize-core
  High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn
  ☆69Updated 2 weeks ago
• MLspike / spikes
  spike extraction from calcium signals (Deneux et al., 2016)
  ☆32Updated 5 years ago
• cortex-lab / allenCCF
  Tools to work with Allen Inst CCF data in matlab
  ☆140Updated 2 months ago
• djamesbarker / pMAT
  Fiber Photometry Modular Analysis Tool Suite
  ☆40Updated 4 years ago
• lahammond / BrainJ
  Fiji pipeline for automated serial section reconstruction and mouse brain analysis.
  ☆29Updated last year
• agordonfennell / OHRBETS
  An open-source ecosystem of hardware and software for head-fixed behavior
  ☆12Updated 4 months ago
• neuroethology / bentoMAT
  A gui for browsing joint calcium imaging + behavioral data.
  ☆54Updated 7 months ago
• open-ephys / Bonsai.Miniscope
  Bonsai package for controlling headborne, calcium imaging miniscopes
  ☆12Updated last year
• zhoupc / OASIS_matlab
  ☆40Updated 3 years ago
• cortex-lab / Suite2P
  Tools for processing 2P recordings
  ☆127Updated last year
• zhoupc / CNMF_E
  Constrained Nonnegative Matrix Factorization for microEndoscopic data
  ☆147Updated last year
• schnitzer-lab / EXTRACT-public
  EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…
  ☆77Updated 9 months ago
• int-brain-lab / iblapps
  pyqt5 dependent applications for IBL sessions
  ☆29Updated 3 weeks ago
• SpikeInterface / probeinterface_library
  Collection of probe description for probeinterface
  ☆16Updated 2 months ago