etterguillaume / MiniscopeAnalysis

Related projects ⓘ

Alternatives and complementary repositories for MiniscopeAnalysis

• zivlab / CellReg
  Registration of cells across sessions.
  ☆70Updated 3 months ago
• JinghaoLu / MIN1PIPE
  A MINiscope 1-photon-based Calcium Imaging Signal Extraction PIPEline.
  ☆59Updated 5 months ago
• talialerner / Photometry-Analysis-Shared
  ☆11Updated 8 years ago
• djamesbarker / pMAT
  Fiber Photometry Modular Analysis Tool Suite
  ☆34Updated 3 years ago
• PeyracheLab / miniscoPy
  A package to analyse calcium imaging data recorded with the Miniscope.
  ☆32Updated 2 years ago
• leomol / FPA
  Fiber photometry analysis
  ☆19Updated 3 weeks ago
• DeNardoLab / BehaviorDEPOT
  Repository for BehaviorDEPOT pipeline app files and source code
  ☆35Updated last month
• kushalkolar / MESmerize
  Platform for Calcium Imaging analysis. DEPRECATED.
  ☆61Updated 11 months ago
• petersaj / AP_histology
  Histology processing
  ☆64Updated 8 months ago
• denisecailab / minian
  miniscope analysis pipeline with interactive visualizations
  ☆91Updated 4 months ago
• int-brain-lab / iblapps
  pyqt5 dependent applications for IBL sessions
  ☆25Updated last week
• Aharoni-Lab / Miniscope-DAQ-QT-Software
  Software for streaming and controlling neural and behavioral data from freely behaving animals
  ☆117Updated 9 months ago
• deisseroth-lab / multifiber
  A GUI and library for doing multi-fiber photometry
  ☆17Updated 7 years ago
• ransona / ROIMatchPub
  Match suite2p ROIs between imaging sessions
  ☆23Updated 5 years ago
• petersaj / neuropixels_trajectory_explorer
  Neuropixels trajectory explorer with the Allen CCF mouse atlas
  ☆69Updated 2 months ago
• schnitzer-lab / EXTRACT-public
  EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…
  ☆65Updated 2 weeks ago
• bahanonu / ciatah
  CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…
  ☆83Updated last week
• wildrootlab / SHARCQ
  Tools to register histological section images and cell count locations to mouse brain atlas
  ☆24Updated 2 years ago
• bahanonu / imaging_tools
  A table containing imaging analysis tools for biology, with a focus on calcium imaging.
  ☆45Updated last year
• neuroethology / bentoMAT
  A gui for browsing joint calcium imaging + behavioral data.
  ☆50Updated 3 months ago
• Whitlock-Group / HERBS
  ☆51Updated 2 months ago
• JingyiGF / HERBS
  ☆19Updated 9 months ago
• nel-lab / mesmerize-core
  High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn
  ☆61Updated 3 weeks ago
• ThomasAkam / Point_Grey_Bonsai_multi_camera_acquisition
  Configurable acquisition from multiple FLIR/Point Grey camera using Bonsai and Python to h264 compress the video on the GPU.
  ☆13Updated last year
• open-ephys / Bonsai.Miniscope
  Bonsai package for controlling headborne, calcium imaging miniscopes
  ☆12Updated 8 months ago
• lahammond / BrainJ
  Fiji pipeline for automated serial section reconstruction and mouse brain analysis.
  ☆28Updated last year
• cortex-lab / allenCCF
  Tools to work with Allen Inst CCF data in matlab
  ☆124Updated 8 months ago
• ryhattori / PatchWarp
  Image processing pipeline to correct motion artifacts and complex image distortions in neuronal calcium imaging data.
  ☆24Updated 11 months ago
• HelmchenLabSoftware / Cascade
  Calibrated inference of spiking from calcium ΔF/F data using deep networks
  ☆123Updated 3 weeks ago
• inscopix / inscopix-cnmfe
  Algorithm for automated source extraction from 1P data
  ☆19Updated last year