Alternatives and similar repositories for multifiber

Users that are interested in multifiber are comparing it to the libraries listed below

• wildrootlab / SHARCQ
  Tools to register histological section images and cell count locations to mouse brain atlas
  ☆28Updated 3 years ago
• ninehundred1 / CalciumSignalExtract
  Extract regions of interest based on correlated pixel intensity
  ☆24Updated 8 years ago
• cortex-lab / allenCCF
  Tools to work with Allen Inst CCF data in matlab
  ☆142Updated 2 months ago
• talialerner / Photometry-Analysis-Shared
  ☆12Updated 9 years ago
• JinghaoLu / MIN1PIPE
  A MINiscope 1-photon-based Calcium Imaging Signal Extraction PIPEline.
  ☆62Updated last year
• bahanonu / ciatah
  CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…
  ☆97Updated 10 months ago
• bahanonu / imaging_tools
  A table containing imaging analysis tools for biology, with a focus on calcium imaging.
  ☆52Updated 2 years ago
• Whitlock-Group / HERBS
  ☆52Updated last year
• djamesbarker / pMAT
  Fiber Photometry Modular Analysis Tool Suite
  ☆40Updated 4 years ago
• petersaj / AP_histology
  Histology processing
  ☆70Updated 3 weeks ago
• DeNardoLab / BehaviorDEPOT
  Repository for BehaviorDEPOT pipeline app files and source code
  ☆38Updated last year
• zivlab / CellReg
  Registration of cells across sessions.
  ☆76Updated last year
• porteralab / EZcalcium
  Calcium Data Extraction and Analysis
  ☆46Updated 2 years ago
• CaliAli-PV / CaliAli
  Calcium imaging inter-session alignment
  ☆13Updated this week
• denisecailab / ezTrack
  Free, platform independent, behavior tracking software.
  ☆139Updated 3 months ago
• MLspike / spikes
  spike extraction from calcium signals (Deneux et al., 2016)
  ☆32Updated 5 years ago
• agordonfennell / OHRBETS
  An open-source ecosystem of hardware and software for head-fixed behavior
  ☆12Updated 2 weeks ago
• LernerLab / GuPPy
  Guided Photometry Analysis in Python, a free and open-source FP analysis tool.
  ☆78Updated 2 weeks ago
• denisecailab / minian
  miniscope analysis pipeline with interactive visualizations
  ☆95Updated last year
• open-ephys / Bonsai.Miniscope
  Bonsai package for controlling headborne, calcium imaging miniscopes
  ☆12Updated last year
• petersaj / neuropixels_trajectory_explorer
  Neuropixels trajectory explorer with the Allen CCF mouse atlas
  ☆77Updated 5 months ago
• ETHZ-INS / DLCAnalyzer
  R Scripts to analyze deep lab cut point data and related data
  ☆67Updated 2 years ago
• benengx / encodingmodel
  Generate a matrix of predictors corresponding to different behavioral variables and process a regression-based encoding model to obtain t…
  ☆18Updated 6 years ago
• cortex-lab / Suite2P
  Tools for processing 2P recordings
  ☆128Updated 2 years ago
• VirtualBrainLab / Pinpoint
  Multi-probe trajectory planning in an intuitive 3D environment
  ☆56Updated this week
• kushalkolar / MESmerize
  Platform for Calcium Imaging analysis. DEPRECATED.
  ☆62Updated last year
• Julie-Fabre / awesome_neuropixels
  A curated list of awesome Neuropixels resources.
  ☆112Updated 2 weeks ago
• HelmchenLabSoftware / Cascade
  Calibrated inference of spiking from calcium ΔF/F data using deep networks
  ☆152Updated 2 weeks ago
• tjd2002 / tjd-shared-code
  Neuroscience/electrophsyiology data analysis tools (mostly Matlab)
  ☆14Updated 6 years ago
• SjulsonLab / methods_class
  "Approaches to Study Neural Circuits" course
  ☆66Updated 9 months ago