smeyerzab / CalciumSignalExtractLinks
Extract regions of interest based on correlated pixel intensity
☆24Updated 8 years ago
Alternatives and similar repositories for CalciumSignalExtract
Users that are interested in CalciumSignalExtract are comparing it to the libraries listed below
Sorting:
- spike extraction from calcium signals (Deneux et al., 2016)☆34Updated 5 years ago
- A GUI and library for doing multi-fiber photometry☆18Updated 8 years ago
- ☆52Updated last year
- Tools to register histological section images and cell count locations to mouse brain atlas☆28Updated 3 years ago
- Histology processing☆72Updated last month
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆99Updated last year
- Registration of cells across sessions.☆76Updated last year
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆57Updated 2 years ago
- A MINiscope 1-photon-based Calcium Imaging Signal Extraction PIPEline.☆64Updated last year
- Tools to work with Allen Inst CCF data in matlab☆145Updated 6 months ago
- Match suite2p ROIs between imaging sessions☆28Updated 6 years ago
- miniscope analysis pipeline with interactive visualizations☆98Updated last year
- ☆41Updated 4 years ago
- Platform for Calcium Imaging analysis. DEPRECATED.☆62Updated 2 years ago
- Calcium Data Extraction and Analysis☆49Updated 3 years ago
- High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn☆70Updated last week
- EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…☆83Updated last year
- motion correction☆17Updated 3 years ago
- Tools for processing 2P recordings☆131Updated 2 years ago
- Neuropixels trajectory explorer with the Allen CCF mouse atlas☆80Updated 9 months ago
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆158Updated 3 weeks ago
- Repository for BehaviorDEPOT pipeline app files and source code☆41Updated last month
- Collection of probe description for probeinterface☆17Updated 2 weeks ago
- Calcium imaging inter-session alignment☆16Updated last month
- Bonsai package for controlling headborne, calcium imaging miniscopes☆12Updated last year
- Image processing pipeline to correct motion artifacts and complex image distortions in neuronal calcium imaging data.☆26Updated 2 years ago
- Control and design of two-photon photostimulation experiments☆18Updated 2 years ago
- Free, platform independent, behavior tracking software.☆143Updated 7 months ago
- Pre-processing pipeline for widefield data☆12Updated 5 years ago
- Serial-section automated anatomy extension for ScanImage☆17Updated 2 weeks ago