gardner-lab / FinchScopeLinks
Single photon tools for Neuroscience
☆36Updated 3 months ago
Alternatives and similar repositories for FinchScope
Users that are interested in FinchScope are comparing it to the libraries listed below
Sorting:
- spike extraction from calcium signals (Deneux et al., 2016)☆34Updated 5 years ago
- miniscope analysis pipeline with interactive visualizations☆98Updated last year
- Compression, denoising and demixing of functional imaging recordings☆28Updated 7 years ago
- Platform for Calcium Imaging analysis. DEPRECATED.☆62Updated 2 years ago
- Match suite2p ROIs between imaging sessions☆28Updated 6 years ago
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆99Updated last year
- Deconvolution of calcium imaging data☆105Updated last year
- ☆41Updated 4 years ago
- EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…☆83Updated last year
- Constrained Nonnegative Matrix Factorization for microEndoscopic data☆151Updated last year
- Serial-section automated anatomy extension for ScanImage☆17Updated last week
- Control and design of two-photon photostimulation experiments☆18Updated 2 years ago
- Tools for processing 2P recordings☆131Updated 2 years ago
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆158Updated 3 weeks ago
- Multichannel time series lossless compression in pure Python based on NumPy and zlib☆43Updated 10 months ago
- Repository for 2nd generation Bpod platform (formerly beta branch of Bpod repository)☆40Updated last month
- A MINiscope 1-photon-based Calcium Imaging Signal Extraction PIPEline.☆65Updated last year
- WIP: Python port of Kilosort2☆50Updated 2 years ago
- Open-source stereotaxic coordinator☆15Updated 3 years ago
- motion correction☆17Updated 3 years ago
- pyqt5 dependent applications for IBL sessions☆32Updated last week
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆57Updated 2 years ago
- IBL core shared libraries☆66Updated this week
- Functions to assess quality of spike sorting results☆34Updated 2 years ago
- Region Of Interest Classification and Tracking☆27Updated this week
- Pytorch implementation of LocaNMF☆36Updated 5 years ago
- High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn☆70Updated last week
- Computational toolbox for analysis of calcium imaging data of neuronal populations☆33Updated 2 years ago
- Registration of cells across sessions.☆76Updated last year
- Web app for viewing results of ephys spike sorting☆27Updated 5 months ago