gardner-lab / FinchScopeLinks
Single photon tools for Neuroscience
☆36Updated 2 months ago
Alternatives and similar repositories for FinchScope
Users that are interested in FinchScope are comparing it to the libraries listed below
Sorting:
- spike extraction from calcium signals (Deneux et al., 2016)☆34Updated 5 years ago
- Match suite2p ROIs between imaging sessions☆27Updated 6 years ago
- Control and design of two-photon photostimulation experiments☆17Updated last year
- ☆41Updated 4 years ago
- Compression, denoising and demixing of functional imaging recordings☆28Updated 7 years ago
- miniscope analysis pipeline with interactive visualizations☆96Updated last year
- Deconvolution of calcium imaging data☆103Updated 11 months ago
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆99Updated last year
- Platform for Calcium Imaging analysis. DEPRECATED.☆62Updated 2 years ago
- motion correction☆17Updated 2 years ago
- Constrained Nonnegative Matrix Factorization for microEndoscopic data☆148Updated last year
- EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…☆82Updated last year
- Tools for processing 2P recordings☆130Updated 2 years ago
- Functions to assess quality of spike sorting results☆34Updated 2 years ago
- Pytorch implementation of LocaNMF☆36Updated 5 years ago
- Registration of cells across sessions.☆75Updated last year
- Region Of Interest Classification and Tracking☆27Updated last week
- Multichannel time series lossless compression in pure Python based on NumPy and zlib☆43Updated 9 months ago
- Matlab routines for online non-rigid motion correction of calcium imaging data☆153Updated 3 years ago
- CellExplorer is a graphical user interface, a standardized processing module and data structure for exploring and classifying single cell…☆111Updated 2 months ago
- Neuropixels case for chronic recordings in freely moving mice.☆19Updated 6 years ago
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆55Updated 2 years ago
- IaC codebase for the NeuroCAAS Platform☆39Updated 2 years ago
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆156Updated last month
- IBL core shared libraries☆66Updated last week
- Serial-section automated anatomy extension for ScanImage☆17Updated last month
- WIP: Python port of Kilosort2☆50Updated 2 years ago
- pyqt5 dependent applications for IBL sessions☆32Updated 2 months ago
- High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn☆70Updated 3 months ago
- MATLAB toolbox for spike-train community detection☆15Updated last year