lucastheis / c2s
A toolbox for inferring spikes from calcium traces.
☆23Updated last year
Related projects ⓘ
Alternatives and complementary repositories for c2s
- Deconvolution of calcium imaging data☆84Updated 2 months ago
- Compression, denoising and demixing of functional imaging recordings☆28Updated 6 years ago
- Generate a matrix of predictors corresponding to different behavioral variables and process a regression-based encoding model to obtain t…☆17Updated 5 years ago
- Blazing fast calcium imaging analysis toolbox☆23Updated 7 years ago
- [DEPRECATED] Python API for NWB < 2.0☆28Updated 7 years ago
- Computational toolbox for analysis of calcium imaging data of neuronal populations☆31Updated last year
- Pytorch implementation of LocaNMF☆33Updated 4 years ago
- a Python machine learning library for neurophysiology data☆36Updated 6 years ago
- Python tools for analysis of neurophysiology data☆36Updated last year
- Linear-Nonlinear-Poisson (LNP) model fitting via Maximally-Informative-Dimensions (MID) / maximum likelihood☆19Updated 6 years ago
- Fitting and simulation of Poisson generalized linear model for single and multi-neuron spike trains (Pillow et al 2008).☆35Updated 5 years ago
- Keras network for spike detection from calcium traces☆12Updated 4 years ago
- Python code for estimation of linear-nonlinear model parameters☆22Updated 3 years ago
- Tools for spike data analysis and visualization☆105Updated last year
- ☆9Updated 4 years ago
- ☆33Updated 3 years ago
- Schemata and libraries for neuroscientific data☆20Updated last month
- Code for "Cortical areas interact through a communication subspace", Semedo et al. (Neuron, 2019)☆43Updated 5 years ago
- WIP: Python port of Kilosort2☆50Updated last year
- spike extraction from calcium signals (Deneux et al., 2016)☆28Updated 4 years ago
- Tools for processing 2P recordings☆122Updated last year
- spike sorting software☆25Updated 6 years ago
- Preprint classes for biological journals☆31Updated 3 years ago
- IaC codebase for the NeuroCAAS Platform☆34Updated 11 months ago
- Recordings of 10k neurons during spontaneous behaviors☆50Updated 7 months ago
- Functions to assess quality of spike sorting results☆31Updated last year
- Analysis code for the results of the spikefinder challenge☆12Updated 6 years ago
- Neuroelectrophysiology object model and data analysis in Python.☆47Updated 3 weeks ago
- Revealing neural correlates of behavior without behavioral measurements☆13Updated 5 years ago
- Fast Exact Spike Inference Via L0 Optimization☆15Updated 4 years ago