Alternatives and similar repositories for AQuA

Users that are interested in AQuA are comparing it to the libraries listed below

• bahanonu / imaging_tools
  A table containing imaging analysis tools for biology, with a focus on calcium imaging.
  ☆52Updated 2 years ago
• nel-lab / FIOLA
  ☆34Updated 4 months ago
• kushalkolar / MESmerize
  Platform for Calcium Imaging analysis. DEPRECATED.
  ☆62Updated last year
• porteralab / EZcalcium
  Calcium Data Extraction and Analysis
  ☆46Updated 2 years ago
• denisecailab / minian
  miniscope analysis pipeline with interactive visualizations
  ☆95Updated last year
• EricThomson / CCN_caiman_mesmerize_workshop_2023
  Repo for CCN workshop on caiman and mesmerize in January 2023
  ☆13Updated 2 years ago
• ryhattori / PatchWarp
  Image processing pipeline to correct motion artifacts and complex image distortions in neuronal calcium imaging data.
  ☆26Updated last year
• bahanonu / ciatah
  CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…
  ☆97Updated 10 months ago
• zhoupc / OASIS_matlab
  ☆40Updated 4 years ago
• nel-lab / mesmerize-core
  High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn
  ☆69Updated last month
• yu-lab-vt / AQuA2
  Activity Quantification and Analysis for molecular spatiotemporal signals
  ☆28Updated last month
• Leveltlab / SpectralSegmentation
  Open source ca imaging processing tools to aquire neural traces from 2 photon image sequences
  ☆13Updated 2 weeks ago
• HelmchenLabSoftware / Cascade
  Calibrated inference of spiking from calcium ΔF/F data using deep networks
  ☆152Updated last week
• DeNardoLab / BehaviorDEPOT
  Repository for BehaviorDEPOT pipeline app files and source code
  ☆38Updated last year
• albert597 / TRAILMAP
  ☆45Updated 5 years ago
• MLspike / spikes
  spike extraction from calcium signals (Deneux et al., 2016)
  ☆32Updated 5 years ago
• brainglobe / brainglobe-heatmap
  Rendering anatomical heatmaps with brainrender and matplotlib
  ☆44Updated 2 weeks ago
• ChristophKirst / ClearMap
  ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.
  ☆53Updated 5 years ago
• PolarBean / DeepSlice
  A python package which aligns histology to the Allen Brain Atlas and Waxholm rat atlas using deep learning.
  ☆105Updated last month
• NTCColumbia / moco
  motion correction
  ☆17Updated 2 years ago
• Whitlock-Group / HERBS
  ☆52Updated last year
• petersaj / AP_histology
  Histology processing
  ☆70Updated 3 weeks ago
• wildrootlab / SHARCQ
  Tools to register histological section images and cell count locations to mouse brain atlas
  ☆28Updated 3 years ago
• FlowRegSuite / flow_registration
  Flow-Registration toolbox for 2P motion compensation
  ☆25Updated 3 weeks ago
• kohth / cilds
  Dimensionality reduction of calcium-imaged neuronal population activity
  ☆16Updated 2 years ago
• brainglobe / cellfinder
  Automated 3D cell detection in very large images
  ☆218Updated last month
• SWC-Advanced-Microscopy / BakingTray
  Serial-section automated anatomy extension for ScanImage
  ☆16Updated last month
• hochbaumGroup / HNCcorr
  HNCcorr algorithm for neuron identification in calcium imaging datasets.
  ☆12Updated 2 years ago
• zivlab / CellReg
  Registration of cells across sessions.
  ☆76Updated last year
• brainglobe / brainreg
  Automated 3D brain registration with support for multiple species and atlases.
  ☆137Updated last month