yu-lab-vt / AQuALinks
An event-based tool for analyzing and quantifying calcium or neurotransmitter imaging data
☆53Updated last year
Alternatives and similar repositories for AQuA
Users that are interested in AQuA are comparing it to the libraries listed below
Sorting:
- ☆34Updated last month
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆50Updated last year
- Platform for Calcium Imaging analysis. DEPRECATED.☆61Updated last year
- Calcium Data Extraction and Analysis☆45Updated 2 years ago
- Repo for CCN workshop on caiman and mesmerize in January 2023☆13Updated 2 years ago
- ☆8Updated 3 years ago
- Activity Quantification and Analysis for molecular spatiotemporal signals☆27Updated 3 months ago
- High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn☆68Updated last month
- Image processing pipeline to correct motion artifacts and complex image distortions in neuronal calcium imaging data.☆26Updated last year
- ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.☆53Updated 5 years ago
- motion correction☆17Updated 2 years ago
- miniscope analysis pipeline with interactive visualizations☆94Updated 11 months ago
- Open source ca imaging processing tools to aquire neural traces from 2 photon image sequences☆13Updated 3 weeks ago
- Tools for working with single-neuron morphological reconstructions☆22Updated last year
- Repository for BehaviorDEPOT pipeline app files and source code☆38Updated 9 months ago
- Flow-Registration toolbox for 2P motion compensation☆24Updated 11 months ago
- UCLA Multiphoton Miniature Microscope☆11Updated last month
- Analysis code for Easy Electrophysiology (www.easyelectrophysiology.com)☆16Updated 3 months ago
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆147Updated last month
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆90Updated 8 months ago
- ☆39Updated 3 years ago
- Segmentation of anatomical structures in a common coordinate space☆33Updated last week
- Rendering anatomical heatmaps with brainrender and matplotlib☆43Updated last week
- Serial-section automated anatomy extension for ScanImage☆15Updated last week
- A python package which aligns histology to the Allen Brain Atlas and Waxholm rat atlas using deep learning.☆98Updated 3 weeks ago
- ☆45Updated 5 years ago
- Brainways☆18Updated last month
- spike extraction from calcium signals (Deneux et al., 2016)☆31Updated 5 years ago
- ☆52Updated 10 months ago
- The ImageJ framework for quantification of neuronal anatomy☆50Updated last week