yu-lab-vt / AQuALinks
An event-based tool for analyzing and quantifying calcium or neurotransmitter imaging data
☆54Updated last year
Alternatives and similar repositories for AQuA
Users that are interested in AQuA are comparing it to the libraries listed below
Sorting:
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆52Updated 2 years ago
- Platform for Calcium Imaging analysis. DEPRECATED.☆62Updated last year
- Calcium Data Extraction and Analysis☆46Updated 2 years ago
- ☆34Updated 5 months ago
- Image processing pipeline to correct motion artifacts and complex image distortions in neuronal calcium imaging data.☆26Updated last year
- High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn☆69Updated last month
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆98Updated 11 months ago
- miniscope analysis pipeline with interactive visualizations☆95Updated last year
- Activity Quantification and Analysis for molecular spatiotemporal signals☆30Updated 2 months ago
- Repo for CCN workshop on caiman and mesmerize in January 2023☆13Updated 2 years ago
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆152Updated 2 weeks ago
- ☆40Updated 4 years ago
- Open source ca imaging processing tools to aquire neural traces from 2 photon image sequences☆13Updated 2 weeks ago
- motion correction☆17Updated 2 years ago
- Histology processing☆71Updated last month
- Flow-Registration toolbox for 2P motion compensation☆26Updated last month
- Automated 3D cell detection in very large images☆219Updated 2 weeks ago
- Tools for working with single-neuron morphological reconstructions☆22Updated last year
- ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.☆53Updated 5 years ago
- Repository for BehaviorDEPOT pipeline app files and source code☆38Updated last year
- Rendering anatomical heatmaps with brainrender and matplotlib☆44Updated 3 weeks ago
- spike extraction from calcium signals (Deneux et al., 2016)☆32Updated 5 years ago
- Serial-section automated anatomy extension for ScanImage☆17Updated 2 months ago
- A Python interface to access neuroanatomical atlases☆164Updated 3 weeks ago
- Analysis code for Easy Electrophysiology (www.easyelectrophysiology.com)☆17Updated 7 months ago
- Segmentation of anatomical structures in a common coordinate space☆33Updated 2 weeks ago
- ☆52Updated last year
- Guided Photometry Analysis in Python, a free and open-source FP analysis tool.☆78Updated last week
- A python package which aligns histology to the Allen Brain Atlas and Waxholm rat atlas using deep learning.☆106Updated 2 months ago
- ☆18Updated 3 years ago