yu-lab-vt / AQuALinks
An event-based tool for analyzing and quantifying calcium or neurotransmitter imaging data
☆54Updated last year
Alternatives and similar repositories for AQuA
Users that are interested in AQuA are comparing it to the libraries listed below
Sorting:
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆56Updated 2 years ago
- ☆34Updated 8 months ago
- Calcium Data Extraction and Analysis☆49Updated 3 years ago
- Platform for Calcium Imaging analysis. DEPRECATED.☆62Updated 2 years ago
- Activity Quantification and Analysis for molecular spatiotemporal signals☆33Updated last month
- High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn☆70Updated 4 months ago
- Image processing pipeline to correct motion artifacts and complex image distortions in neuronal calcium imaging data.☆26Updated 2 years ago
- Open source ca imaging processing tools to aquire neural traces from 2 photon image sequences☆13Updated last month
- miniscope analysis pipeline with interactive visualizations☆97Updated last year
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆99Updated last year
- Repo for CCN workshop on caiman and mesmerize in January 2023☆13Updated 2 years ago
- ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.☆53Updated 5 years ago
- Voltage imaging analysis in python☆10Updated 4 years ago
- ☆41Updated 4 years ago
- Flow-Registration toolbox for 2P motion compensation☆27Updated 4 months ago
- Repository for BehaviorDEPOT pipeline app files and source code☆38Updated last week
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆158Updated 2 months ago
- motion correction☆17Updated 2 years ago
- Analysis code for Easy Electrophysiology (www.easyelectrophysiology.com)☆17Updated 10 months ago
- Tools for working with single-neuron morphological reconstructions☆22Updated last year
- A python package which aligns histology to the Allen Brain Atlas and Waxholm rat atlas using deep learning.☆110Updated 5 months ago
- spike extraction from calcium signals (Deneux et al., 2016)☆34Updated 5 years ago
- Rendering anatomical heatmaps with brainrender and matplotlib☆46Updated last week
- QC and cell type assignment for patch-seq transcriptomics data☆24Updated last year
- Serial-section automated anatomy extension for ScanImage☆17Updated this week
- Automated 3D cell detection in very large images☆223Updated last week
- ☆46Updated 5 years ago
- Histology processing☆72Updated last month
- ☆52Updated last year
- ☆18Updated 3 years ago