Alternatives and similar repositories for HNCcorr:

Users that are interested in HNCcorr are comparing it to the libraries listed below

• Leveltlab / SpectralSegmentation
  Open source ca imaging processing tools to aquire neural traces from 2 photon image sequences
  ☆12Updated 2 weeks ago
• yu-lab-vt / AQuA
  An event-based tool for analyzing and quantifying calcium or neurotransmitter imaging data
  ☆53Updated 8 months ago
• zebrain-lab / Toolbox-Romano-et-al
  Computational toolbox for analysis of calcium imaging data of neuronal populations
  ☆32Updated last year
• nel-lab / FIOLA
  ☆32Updated last year
• zhoupc / OASIS_matlab
  ☆34Updated 3 years ago
• j-friedrich / OASIS
  Deconvolution of calcium imaging data
  ☆86Updated last week
• NTCColumbia / moco
  motion correction
  ☆16Updated 2 years ago
• RichieHakim / ROICaT
  Region Of Interest Classification and Tracking
  ☆16Updated this week
• nitinagarwal / Mouse_Brain_Registration
  Geometry Processing of Conventionally Produced Mouse Brain Slice Images
  ☆7Updated 5 years ago
• ChristophKirst / ClearMap
  ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.
  ☆52Updated 4 years ago
• EricThomson / CCN_caiman_mesmerize_workshop_2023
  Repo for CCN workshop on caiman and mesmerize in January 2023
  ☆13Updated last year
• paninski-lab / funimag
  Compression, denoising and demixing of functional imaging recordings
  ☆28Updated 6 years ago
• ransona / ROIMatchPub
  Match suite2p ROIs between imaging sessions
  ☆23Updated 5 years ago
• porteralab / EZcalcium
  Calcium Data Extraction and Analysis
  ☆43Updated 2 years ago
• JaneliaMLCourse / JaneliaMLCourse
  ☆19Updated 6 years ago
• bahanonu / imaging_tools
  A table containing imaging analysis tools for biology, with a focus on calcium imaging.
  ☆45Updated last year
• bahanonu / ciatah
  CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…
  ☆84Updated 2 months ago
• MLspike / spikes
  spike extraction from calcium signals (Deneux et al., 2016)
  ☆28Updated 4 years ago
• agiovann / CalBlitz
  Blazing fast calcium imaging analysis toolbox
  ☆23Updated 7 years ago
• kohth / cilds
  Dimensionality reduction of calcium-imaged neuronal population activity
  ☆14Updated last year
• Neural-Systems-at-UIO / nutil
  https://nutil.readthedocs.io/en/latest/
  ☆12Updated last week
• kushalkolar / MESmerize
  Platform for Calcium Imaging analysis. DEPRECATED.
  ☆61Updated last year
• AllenInstitute / neuron_morphology
  Tools for working with single-neuron morphological reconstructions
  ☆21Updated 9 months ago
• YijunBao / Shallow-UNet-Neuron-Segmentation_SUNS
  ☆17Updated last year
• yu-lab-vt / AQuA2
  Activity Quantification and Analysis for molecular spatiotemporal signals
  ☆15Updated last month
• owenrandlett / Z-Brain
  Z-Brain Viewer and Analysis Scripts for MAP-Mapping
  ☆21Updated 6 years ago
• cunningham-lab / neurocaas
  IaC codebase for the NeuroCAAS Platform
  ☆35Updated last year
• brainglobe / brainglobe-heatmap
  Rendering anatomical heatmaps with brainrender and matplotlib
  ☆34Updated this week
• brainglobe / brainglobe-segmentation
  Segmentation of anatomical structures in a common coordinate space
  ☆30Updated this week
• phflot / flow_registration
  Flow-Registration toolbox for 2P motion compensation
  ☆21Updated 6 months ago