HNCcorr algorithm for neuron identification in calcium imaging datasets.
☆11Feb 11, 2023Updated 3 years ago
Alternatives and similar repositories for HNCcorr
Users that are interested in HNCcorr are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Fast, Simple Calcium Imaging Segmentation with Fully Convolutional Networks (https://arxiv.org/abs/1707.06314)☆29Dec 8, 2022Updated 3 years ago
- Open source ca imaging processing tools to aquire neural traces from 2 photon image sequences☆13Oct 1, 2026Updated last week
- dataset info for the neurofinder challenge☆13Aug 3, 2016Updated 10 years ago
- SamuROI - Structured analysis of multiple user-defined ROIs, an open source Python-based analysis environment for imaging data.☆17Apr 9, 2019Updated 7 years ago
- Official code for BEAR. "Efficient neural network approximation of robust PCA for automated analysis of calcium imaging data", MICCAI 202…☆18Jun 16, 2022Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- MATLAB analysis functions for Miniscope project.☆19Mar 16, 2017Updated 9 years ago
- Network architecture for "Volumetric ConvNets with Mixed Residual Connections for Automated Prostate Segmentation from 3D MR Images"☆10Feb 28, 2017Updated 9 years ago
- An implementation of Frank Karsten's deck aggregation algorithm described here: http://www.channelfireball.com/articles/magic-math-a-new-…☆12Mar 13, 2018Updated 8 years ago
- Implementation of the constrained deconvolution spike inference algorithm in Matlab☆13Dec 20, 2015Updated 10 years ago
- GUI to compute and explore receptive fields, primarily from calcium imaging recordings☆13Jun 26, 2021Updated 5 years ago
- Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike dec…☆741Updated this week
- Simple single neuron simulations in Julia☆10May 31, 2019Updated 7 years ago
- Computational toolbox for analysis of calcium imaging data of neuronal populations☆33Sep 14, 2023Updated 3 years ago
- Complete Matlab pipeline for large scale calcium imaging data analysis☆261Jul 4, 2023Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- a Python machine learning library for neurophysiology data☆36Nov 10, 2018Updated 7 years ago
- A suite of tools to guide a user through a thorough weekly review in the GTD format.☆16May 3, 2023Updated 3 years ago
- Flow-Registration toolbox for 2P motion compensation☆28Sep 16, 2025Updated last year
- Optimization of single-cell biophysically detailed models☆16Jul 17, 2020Updated 6 years ago
- Configurable acquisition from multiple FLIR/Point Grey camera using Bonsai and Python to h264 compress the video on the GPU.☆16Mar 7, 2025Updated last year
- Software for the paper "Fast and robust active neuron segmentation in two-photon calcium imaging using spatio-temporal deep learning," Pr…☆68Sep 12, 2019Updated 7 years ago
- Automatic cell detection in microscopy data using convolutional networks☆34Nov 22, 2022Updated 3 years ago
- Convert Intan (rhd or rhs) files to NWB file format☆10Oct 2, 2023Updated 3 years ago
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆67Oct 27, 2024Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Automatic ROI Detection☆19Nov 10, 2015Updated 10 years ago
- code related to Shirvalkar et al. 2023 - Nature Neuroscience☆10May 22, 2023Updated 3 years ago
- Match suite2p ROIs between imaging sessions☆28Apr 12, 2019Updated 7 years ago
- scalable multiscale image pyramids in python☆29Aug 5, 2026Updated 2 months ago
- ☆10Nov 27, 2023Updated 2 years ago
- ☆13Jan 12, 2024Updated 2 years ago
- Analytical R Tools for Mass Spectrometry☆13Oct 30, 2025Updated 11 months ago
- TensorFlow examples☆23May 10, 2017Updated 9 years ago
- An interactive image processing program for biologists written in Python.☆26Mar 4, 2026Updated 7 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- The code takes as an input a time series vector of calcium observationsand produces samples from the posterior distribution of the underl…☆21Oct 21, 2016Updated 9 years ago
- HDF5 plugin for ImageJ and Fiji.☆12Oct 1, 2026Updated last week
- ☆26Apr 14, 2025Updated last year
- Platform for Calcium Imaging analysis. DEPRECATED.☆63Nov 26, 2023Updated 2 years ago
- This repository contains code for morphology-free analysis of functional fluorescence microscopy. The focal algorithm, Graph-Filtered Ti…☆16Aug 25, 2026Updated last month
- Show todos from different sources in a sidebar like app☆27Oct 1, 2026Updated 2 weeks ago
- Render the output of 3DGS GANs and invert your own face captured from a webcam☆17Jun 5, 2026Updated 4 months ago