hochbaumGroup / HNCcorr
HNCcorr algorithm for neuron identification in calcium imaging datasets.
☆12Updated 2 years ago
Alternatives and similar repositories for HNCcorr:
Users that are interested in HNCcorr are comparing it to the libraries listed below
- Open source ca imaging processing tools to aquire neural traces from 2 photon image sequences☆13Updated 2 weeks ago
- ☆8Updated 3 years ago
- ☆36Updated 3 years ago
- Deconvolution of calcium imaging data☆93Updated 3 months ago
- An event-based tool for analyzing and quantifying calcium or neurotransmitter imaging data☆53Updated 11 months ago
- Computational toolbox for analysis of calcium imaging data of neuronal populations☆32Updated last year
- ☆34Updated last year
- QC and cell type assignment for patch-seq transcriptomics data☆19Updated 11 months ago
- motion correction☆17Updated 2 years ago
- IaC codebase for the NeuroCAAS Platform☆37Updated last year
- Platform for Calcium Imaging analysis. DEPRECATED.☆60Updated last year
- Calcium Data Extraction and Analysis☆43Updated 2 years ago
- spike extraction from calcium signals (Deneux et al., 2016)☆29Updated 5 years ago
- Compression, denoising and demixing of functional imaging recordings☆28Updated 6 years ago
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆87Updated 5 months ago
- Region Of Interest Classification and Tracking☆18Updated last week
- Match suite2p ROIs between imaging sessions☆25Updated 6 years ago
- ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.☆53Updated 4 years ago
- Flow-Registration toolbox for 2P motion compensation☆23Updated 8 months ago
- This repository contains code used for the fly brain activity experiments☆18Updated last year
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆49Updated last year
- Repo for CCN workshop on caiman and mesmerize in January 2023☆13Updated 2 years ago
- Blazing fast calcium imaging analysis toolbox☆22Updated 7 years ago
- Z-Brain Viewer and Analysis Scripts for MAP-Mapping☆22Updated last week
- Tools for working with single-neuron morphological reconstructions☆21Updated 11 months ago
- Code published with the paper J. Mölter, L. Avitan, and G. J. Goodhill. "Detecting neural assemblies in calcium imaging data". BMC Biolog…☆12Updated 5 years ago
- ☆17Updated last year
- Histology processing☆65Updated this week
- Geometry Processing of Conventionally Produced Mouse Brain Slice Images☆7Updated 5 years ago
- a Python machine learning library for neurophysiology data☆36Updated 6 years ago