Alternatives and similar repositories for constrained-foopsi:

Users that are interested in constrained-foopsi are comparing it to the libraries listed below

• epnev / continuous_time_ca_sampler
  The code takes as an input a time series vector of calcium observationsand produces samples from the posterior distribution of the underl…
  ☆20Updated 8 years ago
• dmeliza / biopreprint
  Preprint classes for biological journals
  ☆30Updated 4 years ago
• MouseLand / stringer-pachitariu-et-al-2018a
  Recordings of 10k neurons during spontaneous behaviors
  ☆50Updated 11 months ago
• j-friedrich / OASIS
  Deconvolution of calcium imaging data
  ☆90Updated last month
• AllenInstitute / neuroglia
  a Python machine learning library for neurophysiology data
  ☆36Updated 6 years ago
• baccuslab / pyret
  Python tools for analysis of neurophysiology data
  ☆36Updated last year
• slinderman / pyglm
  Interpretable neural spike train models with fully-Bayesian inference algorithms
  ☆47Updated 6 years ago
• KordingLab / spykes
  Tools for spike data analysis and visualization
  ☆104Updated 2 years ago
• AllenInstitute / SWDB_2017
  course materials for the 2017 Summer Workshop on the Dynamic Brain
  ☆11Updated 7 years ago
• codeneuro / neurofinder
  benchmarking challenge for finding neurons in imaging data
  ☆73Updated 5 years ago
• project-improv / improv
  Adaptive Platform for Neuroscience Experiments
  ☆40Updated last month
• lucastheis / c2s
  A toolbox for inferring spikes from calcium traces.
  ☆23Updated last year
• neuromusic / crcnsget
  cli for downloading data from crcns.org
  ☆31Updated last year
• ahwillia / PyNeuron-Toolbox
  Some python functions to supplement the NEURON python module
  ☆28Updated 5 years ago
• lsolanka / gridcells
  Grid cell data analysis package.
  ☆6Updated 9 years ago
• liubenyuan / py-oopsi
  Python implementation of fast-oopsi, smc-oopsi, wiener, and discretize with binning
  ☆14Updated 2 years ago
• frsong / pycog
  Train excitatory-inhibitory recurrent neural networks for cognitive tasks.
  ☆49Updated 9 years ago
• MouseLand / EnsemblePursuit
  ☆9Updated 4 years ago
• lacerbi / workshop-bristol-2019
  Introductory workshop to modeling and model fitting in psychophysics and neuroscience
  ☆11Updated 5 years ago
• cunni / ldr
  code for Cunningham and Ghahramani (2015), Journal of Machine Learning Research
  ☆27Updated 8 years ago
• MouseLand / stringer-pachitariu-et-al-2018b
  Responses of 10,000 neurons to 2,800 natural images
  ☆68Updated 5 years ago
• baccuslab / inferring-hidden-structure-retinal-circuits
  Data and example scripts used in the paper `Inferring hidden structure in multilayered neural circuits`
  ☆14Updated 3 years ago
• lyprince / hierarchical_lfads
  Pytorch implementation of lfads, and hierarchical extension
  ☆26Updated 3 years ago
• zebrain-lab / Toolbox-Romano-et-al
  Computational toolbox for analysis of calcium imaging data of neuronal populations
  ☆32Updated last year
• ProjectPyRhO / PyRhO
  A virtual optogenetics laboratory
  ☆35Updated last year
• pillowlab / LNPfitting
  Linear-Nonlinear-Poisson (LNP) model fitting via Maximally-Informative-Dimensions (MID) / maximum likelihood
  ☆18Updated 7 years ago
• NeuralEnsemble / NeuroTools
  NeuroTools is a collection of tools for representing and anlyzing neuroscientific data.
  ☆31Updated 4 years ago
• catniplab / vlgp
  Dimensionality reduction of spikes trains
  ☆49Updated 3 years ago
• slinderman / theano_pyglm
  Generalized linear models for neural spike train modeling, in Python! With GPU-accelerated fully-Bayesian inference, MAP inference, and n…
  ☆44Updated 10 years ago
• cunningham-lab / neurocaas
  IaC codebase for the NeuroCAAS Platform
  ☆37Updated last year