This toolbox includes routines for using principal component analysis (PCA) and independent component analysis (ICA) to extract cellular signals from imaging data sets. A full description and validation of the method is provided in the paper, "Automated Analysis of Cellular Signals from Large-Scale Calcium Imaging Data," Neuron, 63:747 (2009): h…
☆27Aug 18, 2018Updated 7 years ago
Alternatives and similar repositories for CellSort
Users that are interested in CellSort are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆42Sep 29, 2021Updated 4 years ago
- Automatic cell detection in microscopy data using convolutional networks☆34Nov 22, 2022Updated 3 years ago
- Bonsai package for controlling headborne, calcium imaging miniscopes☆12Mar 4, 2024Updated 2 years ago
- Codebase for Cross-Spectral Factor Analysis (Gallagher et al., 2017)☆15Jan 18, 2021Updated 5 years ago
- A toolbox for inferring spikes from calcium traces.☆23Jun 16, 2023Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Python package for analysis of dynamic fluorescence microscopy data☆104Mar 14, 2019Updated 7 years ago
- benchmarking challenge for finding neurons in imaging data☆77Apr 10, 2019Updated 7 years ago
- Image processing and tools for widefield imaging☆20Dec 7, 2019Updated 6 years ago
- Analysis package for miniscope data☆14Dec 6, 2022Updated 3 years ago
- Resample data based on DTW alignment☆10Jun 8, 2017Updated 9 years ago
- scripts for using spark on janelia's cluster☆12Nov 12, 2023Updated 2 years ago
- A python script editor plugin for napari☆11Jul 8, 2023Updated 3 years ago
- Constrained Nonnegative Matrix Factorization for microEndoscopic data☆151Aug 2, 2024Updated last year
- ☆12Jun 19, 2024Updated 2 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ☆20Nov 25, 2016Updated 9 years ago
- Software for the paper "Fast and robust active neuron segmentation in two-photon calcium imaging using spatio-temporal deep learning," Pr…☆68Sep 12, 2019Updated 6 years ago
- A Bonsai interface for real-time markerless pose estimation using DeepLabCut☆54Jun 1, 2025Updated last year
- R package to infer spatial location of neuronal subpopulations within the developing mouse brain by integrating single-cell RNA-seq data …☆17Jul 15, 2015Updated 11 years ago
- UCLA Multiphoton Miniature Microscope☆17May 19, 2025Updated last year
- Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike dec…☆724Jun 27, 2026Updated 3 weeks ago
- A curated list of awesome Janelia software☆17Feb 26, 2025Updated last year
- Linear-Nonlinear-Poisson (LNP) model fitting via Maximally-Informative-Dimensions (MID) / maximum likelihood☆19Nov 26, 2017Updated 8 years ago
- A gui for browsing joint calcium imaging + behavioral data.☆57Jan 22, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A GUI and library for doing multi-fiber photometry☆19Oct 12, 2017Updated 8 years ago
- An open-source ecosystem of hardware and software for head-fixed behavior☆14Sep 25, 2025Updated 9 months ago
- Fiber Photometry Modular Analysis Tool Suite☆44Jul 26, 2021Updated 4 years ago
- The repository of NEUBIAS textbook 2021☆10Jan 24, 2022Updated 4 years ago
- MATLAB Streaming Image Viewer - a viewing and analysis platform for ultra-large 3D imaging data☆14Jul 15, 2020Updated 6 years ago
- Perform image registration of 2D and 3D volumes using state-of-the-art deformable registration.☆23Jul 15, 2019Updated 7 years ago
- Database for experimental neuroscience laboratories☆51Updated this week
- Introductory workshop to modeling and model fitting in psychophysics and neuroscience☆11May 9, 2019Updated 7 years ago
- Generalized Transfer Entropy analysis for model-free network reconstruction.☆31Nov 17, 2020Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A napari plugin to view and edit layer metadata☆13Jul 13, 2026Updated last week
- ☆16Updated this week
- GUI to run DeepLabCut on live video feed☆68Updated this week
- ☆14Jan 22, 2026Updated 5 months ago
- Matlab routines for online non-rigid motion correction of calcium imaging data☆159May 29, 2022Updated 4 years ago
- Interactive surface analysis in napari for bio-mechanical stress measurement☆18Jul 13, 2026Updated last week
- Software for processing and analyzing STARmap experiments.☆39Aug 27, 2019Updated 6 years ago