mukamel-lab / CellSortLinks
This toolbox includes routines for using principal component analysis (PCA) and independent component analysis (ICA) to extract cellular signals from imaging data sets. A full description and validation of the method is provided in the paper, "Automated Analysis of Cellular Signals from Large-Scale Calcium Imaging Data," Neuron, 63:747 (2009): h…
☆26Updated 7 years ago
Alternatives and similar repositories for CellSort
Users that are interested in CellSort are comparing it to the libraries listed below
Sorting:
- ☆40Updated 3 years ago
- ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.☆53Updated 5 years ago
- MATLAB Streaming Image Viewer - a viewing and analysis platform for ultra-large 3D imaging data☆14Updated 5 years ago
- Z-Brain Viewer and Analysis Scripts for MAP-Mapping☆22Updated 4 months ago
- Extract regions of interest based on correlated pixel intensity☆24Updated 8 years ago
- Match suite2p ROIs between imaging sessions☆27Updated 6 years ago
- Generate a matrix of predictors corresponding to different behavioral variables and process a regression-based encoding model to obtain t…☆18Updated 6 years ago
- motion correction☆17Updated 2 years ago
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆93Updated 9 months ago
- ☆20Updated 6 years ago
- Python package for analysis of dynamic fluorescence microscopy data☆101Updated 6 years ago
- ☆34Updated 3 months ago
- Compression, denoising and demixing of functional imaging recordings☆28Updated 7 years ago
- Code for the image processing and analysis described our Nature Protocols paper.☆10Updated 10 years ago
- HNCcorr algorithm for neuron identification in calcium imaging datasets.☆12Updated 2 years ago
- A GUI and library for doing multi-fiber photometry☆18Updated 7 years ago
- miniscope analysis pipeline with interactive visualizations☆95Updated last year
- An event-based tool for analyzing and quantifying calcium or neurotransmitter imaging data☆53Updated last year
- Computational toolbox for analysis of calcium imaging data of neuronal populations☆33Updated last year
- Tools to register histological section images and cell count locations to mouse brain atlas☆28Updated 3 years ago
- Activity Quantification and Analysis for molecular spatiotemporal signals☆27Updated this week
- Deconvolution of calcium imaging data☆98Updated 7 months ago
- Single photon tools for Neuroscience☆35Updated last year
- ☆52Updated 11 months ago
- Calcium Data Extraction and Analysis☆45Updated 2 years ago
- Pytorch implementation of LocaNMF☆36Updated 5 years ago
- Constrained Nonnegative Matrix Factorization for microEndoscopic data☆147Updated last year
- Platform for Calcium Imaging analysis. DEPRECATED.☆62Updated last year
- ☆28Updated last year
- spike extraction from calcium signals (Deneux et al., 2016)☆32Updated 5 years ago