mukamel-lab / CellSort
This toolbox includes routines for using principal component analysis (PCA) and independent component analysis (ICA) to extract cellular signals from imaging data sets. A full description and validation of the method is provided in the paper, "Automated Analysis of Cellular Signals from Large-Scale Calcium Imaging Data," Neuron, 63:747 (2009): h…
☆25Updated 6 years ago
Alternatives and similar repositories for CellSort:
Users that are interested in CellSort are comparing it to the libraries listed below
- ☆33Updated 3 years ago
- motion correction☆16Updated last year
- ☆25Updated 6 months ago
- ☆32Updated last year
- Dimensionality reduction of calcium-imaged neuronal population activity☆14Updated last year
- Match suite2p ROIs between imaging sessions☆23Updated 5 years ago
- Neuroscience/electrophsyiology data analysis tools (mostly Matlab)☆14Updated 5 years ago
- A MATLAB toolbox for running behavioral neuroscience experiments and managing data☆33Updated 7 months ago
- Code for the image processing and analysis described our Nature Protocols paper.☆10Updated 9 years ago
- Tools to register histological section images and cell count locations to mouse brain atlas☆25Updated 2 years ago
- Image processing and tools for widefield imaging☆18Updated 5 years ago
- spike extraction from calcium signals (Deneux et al., 2016)☆28Updated 4 years ago
- Z-Brain Viewer and Analysis Scripts for MAP-Mapping☆21Updated 6 years ago
- Multichannel time series lossless compression in pure Python based on NumPy and zlib☆36Updated 5 months ago
- Calcium Data Extraction and Analysis☆43Updated 2 years ago
- Open source ca imaging processing tools to aquire neural traces from 2 photon image sequences☆12Updated this week
- IaC codebase for the NeuroCAAS Platform☆35Updated last year
- Region Of Interest Classification and Tracking☆16Updated this week
- ☆51Updated 4 months ago
- Python-based module for extracting from, converting between, and handling optical imaging data from several file formats. Inspired by Spi…☆13Updated this week
- An event-based tool for analyzing and quantifying calcium or neurotransmitter imaging data☆52Updated 8 months ago
- Histology processing☆64Updated 9 months ago
- Functions to assess quality of spike sorting results☆32Updated last year
- Pytorch implementation of LocaNMF☆34Updated 4 years ago
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆84Updated 2 months ago
- MATLAB Streaming Image Viewer - a viewing and analysis platform for ultra-large 3D imaging data☆13Updated 4 years ago
- Browser-based NWB visualization and DANDI exploration☆50Updated 3 weeks ago
- Repo for CCN workshop on caiman and mesmerize in January 2023☆13Updated last year
- Repository for BehaviorDEPOT pipeline app files and source code☆36Updated 3 months ago
- Blazing fast calcium imaging analysis toolbox☆23Updated 7 years ago