mukamel-lab / CellSort
This toolbox includes routines for using principal component analysis (PCA) and independent component analysis (ICA) to extract cellular signals from imaging data sets. A full description and validation of the method is provided in the paper, "Automated Analysis of Cellular Signals from Large-Scale Calcium Imaging Data," Neuron, 63:747 (2009): h…
☆26Updated 6 years ago
Alternatives and similar repositories for CellSort:
Users that are interested in CellSort are comparing it to the libraries listed below
- ☆36Updated 3 years ago
- ☆34Updated last year
- ☆8Updated 3 years ago
- spike extraction from calcium signals (Deneux et al., 2016)☆29Updated 5 years ago
- Image processing and tools for widefield imaging☆18Updated 5 years ago
- motion correction☆17Updated 2 years ago
- Match suite2p ROIs between imaging sessions☆25Updated 6 years ago
- Region Of Interest Classification and Tracking☆18Updated last week
- IaC codebase for the NeuroCAAS Platform☆37Updated last year
- ☆27Updated 9 months ago
- Bonsai package for controlling headborne, calcium imaging miniscopes☆12Updated last year
- Tools to register histological section images and cell count locations to mouse brain atlas☆25Updated 2 years ago
- Compression, denoising and demixing of functional imaging recordings☆28Updated 6 years ago
- Open source ca imaging processing tools to aquire neural traces from 2 photon image sequences☆13Updated 2 weeks ago
- Neuroscience/electrophsyiology data analysis tools (mostly Matlab)☆14Updated 5 years ago
- Deconvolution of calcium imaging data☆93Updated 3 months ago
- MATLAB Streaming Image Viewer - a viewing and analysis platform for ultra-large 3D imaging data☆14Updated 4 years ago
- HNCcorr algorithm for neuron identification in calcium imaging datasets.☆12Updated 2 years ago
- This repository contains code used for the fly brain activity experiments☆18Updated last year
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆49Updated last year
- Single photon tools for Neuroscience☆35Updated last year
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆87Updated 5 months ago
- Z-Brain Viewer and Analysis Scripts for MAP-Mapping☆22Updated last week
- Dimensionality reduction of calcium-imaged neuronal population activity☆14Updated 2 years ago
- Platform for Calcium Imaging analysis. DEPRECATED.☆60Updated last year
- An event-based tool for analyzing and quantifying calcium or neurotransmitter imaging data☆53Updated 11 months ago
- Multichannel time series lossless compression in pure Python based on NumPy and zlib☆39Updated last month
- Functions to assess quality of spike sorting results☆32Updated last year
- Image processing pipeline to correct motion artifacts and complex image distortions in neuronal calcium imaging data.☆25Updated last year
- Histology processing☆65Updated this week