HarveyLab / Acquisition2P_classLinks
For managing 2P imaging datasets from preprocessing to activity trace extraction
☆11Updated 6 years ago
Alternatives and similar repositories for Acquisition2P_class
Users that are interested in Acquisition2P_class are comparing it to the libraries listed below
Sorting:
- Code for "Cortical areas interact through a communication subspace", Semedo et al. (Neuron, 2019)☆46Updated 5 years ago
- Code implements the LN model used to describe spike trains of MEC neurons based on the animal's position, head direction, speed, and thet…☆23Updated 3 years ago
- Bayesian learning and inference for state space models☆13Updated 3 years ago
- A course given at the 2017 Canadian Neuroscience meeting, Neural Signal Analysis Satellite.☆14Updated 7 years ago
- MATLAB toolbox for spike-train community detection☆15Updated last year
- ☆23Updated 5 years ago
- Fitting and analysis of trial-based neural spike responses with Generalized Linear Model (GLM).☆70Updated 5 years ago
- Registration of cells across sessions.☆75Updated 10 months ago
- Revealing neural correlates of behavior without behavioral measurements☆14Updated 5 years ago
- Code accompanying Steinmetz et al., 2019☆60Updated 3 years ago
- Tools to work with Allen Inst CCF data in matlab☆135Updated last year
- Simple tutorial on Gaussian and Poisson GLMs for single and multi-neuron spike train data☆94Updated 3 years ago
- pynapple collaborative data analysis (high level python scripts)☆37Updated last year
- Code to reproduce figures for "Mice alternate between discrete strategies during perceptual decision-making" from Ashwood, Roy, Stone, IB…☆49Updated last year
- Neuropixels trajectory explorer with the Allen CCF mouse atlas☆74Updated 3 months ago
- NEW v1.1: https://github.com/dstolz/epsych_v1.1 Epsych is a toolbox for extending Tucker-Davis Technologies hardware and sof…☆15Updated 3 years ago
- Gallery of visualizations and analyses of the Allen Brain Observatory☆25Updated 2 years ago
- Code for internal lab sharing - polishing has started but is by no means complete☆127Updated last year
- Fitting and simulation of Poisson generalized linear model for single and multi-neuron spike trains (Pillow et al 2008).☆42Updated 5 years ago
- Tools to register histological section images and cell count locations to mouse brain atlas☆27Updated 3 years ago
- a visualization method for neural data☆229Updated 3 months ago
- Supplementary code for the paper "Linking connectivity, dynamics and computations in low-rank recurrent neural networks" by F. Mastrogius…☆35Updated 7 years ago
- State space models for decoding hippocampal trajectories and determining their type using sorted or clusterless data☆49Updated 9 months ago
- NeuroPyxels (npyx) is a python library built for electrophysiologists using Neuropixels electrodes. This package stems from the need of a…☆126Updated 2 weeks ago
- "Approaches to Study Neural Circuits" course☆65Updated 7 months ago
- pyqt5 dependent applications for IBL sessions☆28Updated last week
- A very simple and barebones tensor decomposition library for CP decomposition a.k.a. PARAFAC a.k.a. TCA☆35Updated last year
- A repository of neural manifold techniques described and compared in "Neural manifold analysis of brain circuit dynamics in health and di…☆25Updated last year
- Neuroscience/electrophsyiology data analysis tools (mostly Matlab)☆14Updated 6 years ago
- ☆55Updated 2 years ago