jovo / oopsiLinks
up-to-date code for model-based inference of spike trains from calcium imaging
☆24Updated 7 years ago
Alternatives and similar repositories for oopsi
Users that are interested in oopsi are comparing it to the libraries listed below
Sorting:
- a repository containing everything relevant to our fast non-negative deconvolution work☆35Updated 9 years ago
- Computational toolbox for analysis of calcium imaging data of neuronal populations☆33Updated 2 years ago
- Blazing fast calcium imaging analysis toolbox☆21Updated 8 years ago
- Compression, denoising and demixing of functional imaging recordings☆28Updated 7 years ago
- ☆41Updated 4 years ago
- A toolbox for inferring spikes from calcium traces.☆23Updated 2 years ago
- motion correction☆17Updated 2 years ago
- spike extraction from calcium signals (Deneux et al., 2016)☆34Updated 5 years ago
- Tools for processing 2P recordings☆130Updated 2 years ago
- ☆20Updated 7 years ago
- Deconvolution of calcium imaging data☆104Updated 11 months ago
- SpikeForest -- spike sorting analysis for website☆16Updated 5 years ago
- An algorithm for unsupervised discovery of sequential structure☆169Updated last year
- Pytorch implementation of LocaNMF☆36Updated 5 years ago
- Mesoscale activity ephys ingest schema☆11Updated 2 years ago
- ☆24Updated 5 years ago
- a Python machine learning library for neurophysiology data☆36Updated 7 years ago
- Control and design of two-photon photostimulation experiments☆17Updated 2 years ago
- IaC codebase for the NeuroCAAS Platform☆39Updated 2 years ago
- JRCLUST☆35Updated last year
- miniscope analysis pipeline with interactive visualizations☆97Updated last year
- Revealing neural correlates of behavior without behavioral measurements☆15Updated 6 years ago
- ☆26Updated 5 years ago
- Tools for working with single-neuron morphological reconstructions☆22Updated last year
- Fitting and simulation of Poisson generalized linear model for single and multi-neuron spike trains (Pillow et al 2008).☆43Updated 6 years ago
- UnitRefine is a machine-learning toolbox that simplifies spike sorting curation by reducing manual curation.☆64Updated last week
- IBL core shared libraries☆66Updated last week
- A package to analyse calcium imaging data recorded with the Miniscope.☆33Updated 3 years ago
- Python-based module for extracting from, converting between, and handling optical imaging data from several file formats. Inspired by Spi…☆15Updated 2 weeks ago
- Collection of tools to handle Neuropixel 1.0 and 2.0 data☆19Updated last week