up-to-date code for model-based inference of spike trains from calcium imaging
☆24Apr 16, 2018Updated 7 years ago
Alternatives and similar repositories for oopsi
Users that are interested in oopsi are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- a repository containing everything relevant to our fast non-negative deconvolution work☆35Nov 28, 2016Updated 9 years ago
- The code takes as an input a time series vector of calcium observationsand produces samples from the posterior distribution of the underl…☆20Oct 21, 2016Updated 9 years ago
- A Python implementation of fast non-negative deconvolution☆23Oct 22, 2019Updated 6 years ago
- Schemata and libraries for neuroscientific data☆33Sep 17, 2025Updated 6 months ago
- A toolbox for inferring spikes from calcium traces.☆23Jun 16, 2023Updated 2 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- spike extraction from calcium signals (Deneux et al., 2016)☆35Apr 9, 2020Updated 6 years ago
- Complete Matlab pipeline for large scale calcium imaging data analysis☆260Jul 4, 2023Updated 2 years ago
- Tools for processing 2P recordings☆132Oct 9, 2023Updated 2 years ago
- Fast Exact Spike Inference Via L0 Optimization☆15Jun 10, 2020Updated 5 years ago
- ☆20Oct 16, 2018Updated 7 years ago
- Matlab pipeline for simulating dynamical networks and evaluating dynamic community tracking methods, including CPM, MMM and DPPM☆13Nov 19, 2020Updated 5 years ago
- Aligning images acquired with the IBEX microscopy imaging technique☆20Mar 5, 2026Updated last month
- ☆43Sep 29, 2021Updated 4 years ago
- A terminal plotter for tensorboard and csv☆10Jul 20, 2024Updated last year
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- Python implementation of ImageJ Cell Magic Wand tool☆11Oct 28, 2016Updated 9 years ago
- ☆17May 26, 2023Updated 2 years ago
- A Deep Architecture for Synapse Detection in Multiplexed Fluorescence Images☆14May 28, 2019Updated 6 years ago
- Constrained Nonnegative Matrix Factorization for microEndoscopic data☆152Aug 2, 2024Updated last year
- Collaborative Brain Wave Analysis Pipeline (Cobrawap)☆26Sep 25, 2025Updated 6 months ago
- jquery selectors for HTML & XML in erlang☆21May 4, 2014Updated 11 years ago
- ☆32Feb 28, 2026Updated last month
- CLIJ is deprecated. Visit CLIJ2☆56Jun 12, 2021Updated 4 years ago
- Harvey Lab miniaturized mouse VR rig hardware for virtual navigation and decision-making tasks☆43Aug 12, 2024Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆12May 21, 2025Updated 10 months ago
- Dimensionality reduction of spikes trains☆49Oct 9, 2021Updated 4 years ago
- Calcium Data Extraction and Analysis☆49Dec 5, 2022Updated 3 years ago
- Image registration toolbox for Julia☆11Sep 3, 2019Updated 6 years ago
- Blazing fast calcium imaging analysis toolbox☆21Jun 20, 2017Updated 8 years ago
- Relational data pipelines for the science lab☆42Jul 14, 2023Updated 2 years ago
- home of the bear's lair☆10May 19, 2017Updated 8 years ago
- Recording software for andor cameras with the possibility of implementing analysis in real time☆12Aug 12, 2019Updated 6 years ago
- Materials accompanying the upstrap paper☆12Oct 19, 2020Updated 5 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Video encoding for 8 bit RGB images, 16 bit grayscale depth images and possibly more.☆10Dec 14, 2015Updated 10 years ago
- YALL1: Your ALgorithms for L1☆13Jan 28, 2018Updated 8 years ago
- Python package for Sparse Linear Regression (SLiR)☆21Jul 16, 2019Updated 6 years ago
- Warp your data like Jet warps your perception☆13Feb 16, 2024Updated 2 years ago
- Computational toolbox for analysis of calcium imaging data of neuronal populations☆33Sep 14, 2023Updated 2 years ago
- Differentiable 4f microscope/phase mask simulation☆10Feb 23, 2025Updated last year
- Python code implementing the ZETA-test☆27Jan 21, 2026Updated 2 months ago