Alternatives and similar repositories for kmcp:

Users that are interested in kmcp are comparing it to the libraries listed below

• wdecoster / nanocomp
  Comparison of multiple long read datasets
  ☆121Updated last month
• EBI-Metagenomics / emg-viral-pipeline
  VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies
  ☆128Updated this week
• snayfach / MGV
  Supporting code for uncultivated gut virus manuscript
  ☆68Updated last year
• PacificBiosciences / ccs
  CCS: Generate Highly Accurate Single-Molecule Consensus Reads (HiFi Reads)
  ☆117Updated 10 months ago
• pirovc / genome_updater
  Bash script to download/update snapshots of files from NCBI genomes repository (refseq/genbank) with track of changes and without redunda…
  ☆146Updated last month
• medvedevgroup / SibeliaZ
  A fast whole-genome aligner based on de Bruijn graphs
  ☆142Updated 2 years ago
• Mykrobe-tools / mykrobe
  Antibiotic resistance prediction in minutes
  ☆106Updated last month
• xiaochuanle / NECAT
  Nanopore data assembler
  ☆140Updated 2 years ago
• lskatz / mashtree
  Create a tree using Mash distances
  ☆157Updated last year
• mgalardini / pyseer
  SEER, reimplemented in python 🐍🔮
  ☆115Updated 2 months ago
• marbl / meryl
  A genomic k-mer counter (and sequence utility) with nice features.
  ☆124Updated 2 months ago
• neherlab / pangraph
  A bioinformatic toolkit to align genome assemblies into pangenome graphs
  ☆92Updated this week
• wwood / singlem
  Novelty-inclusive microbial community profiling of shotgun metagenomes
  ☆137Updated last month
• vgl-hub / gfastats
  A single fast and exhaustive tool for summary statistics and simultaneous *fa* (fasta, fastq, gfa [.gz]) genome assembly file manipulatio…
  ☆96Updated this week
• cmks / DAS_Tool
  DAS Tool
  ☆142Updated 8 months ago
• mikolmogorov / Ragout
  Chromosome-level scaffolding using multiple references
  ☆159Updated 4 months ago
• genomicsITER / NanoCLUST
  NanoCLUST is an analysis pipeline for UMAP-based classification of amplicon-based full-length 16S rRNA nanopore reads
  ☆107Updated last year
• soedinglab / metaeuk
  MetaEuk - sensitive, high-throughput gene discovery and annotation for large-scale eukaryotic metagenomics
  ☆180Updated 6 months ago
• BenLangmead / aws-indexes
  Catalog of genomic indexes freely available from public clouds
  ☆58Updated last month
• AdmiralenOla / Scoary
  Pan-genome wide association studies
  ☆173Updated 7 months ago
• DecodeGenetics / Ratatosk
  Hybrid error correction of long reads using colored de Bruijn graphs
  ☆100Updated 3 months ago
• ChaissonLab / LRA
  Long read aligner
  ☆114Updated last year
• BGI-Qingdao / TGS-GapCloser
  A gap-closing software tool that uses long reads to enhance genome assembly.
  ☆190Updated 4 months ago
• rpetit3 / dragonflye
  Assemble bacterial isolate genomes from Nanopore reads
  ☆121Updated this week
• dfguan / purge_dups
  haplotypic duplication identification tool
  ☆218Updated last year
• adamewing / methylartist
  Tools for plotting methylation data in various ways
  ☆136Updated this week
• yfukasawa / LongQC
  LongQC is a tool for the data quality control of the PacBio and ONT long reads.
  ☆155Updated last year
• marcelauliano / MitoHiFi
  Find, circularise and annotate mitogenome from PacBio assemblies
  ☆171Updated this week
• wdecoster / nanofilt
  Filtering and trimming of long read sequencing data
  ☆197Updated 2 years ago
• marbl / Winnowmap
  Long read / genome alignment software
  ☆268Updated 2 months ago