Accurate metagenomic profiling && Fast large-scale sequence/genome searching
☆221Apr 24, 2026Updated 5 months ago
Alternatives and similar repositories for kmcp
Users that are interested in kmcp are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Fast average nucleotide identity (ANI) calculator for bacterial genomes, MAGs, and contigs. Supports genome comparisons and large-scale d…☆265Updated this week
- Strain-level haplotyping for metagenomes with short or long-reads.☆71Apr 10, 2025Updated last year
- Strain-level abundances estimation in metagenomic samples using variation graphs☆24Jan 29, 2023Updated 3 years ago
- A Practical and Efficient NCBI Taxonomy Toolkit, also supports creating NCBI-style taxdump files for custom taxonomies like GTDB/ICTV☆480Jul 15, 2026Updated 2 months ago
- LexicMap: efficient sequence alignment against millions of prokaryotic genomes☆226Updated this week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Scalable creating/updating of metagenome profiling databases☆62Jun 25, 2025Updated last year
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆325Updated this week
- ganon2 classifies genomic sequences against large sets of references efficiently, with integrated download and update of databases (refse…☆108Updated this week
- A versatile toolkit for k-mers with taxonomic information☆84Aug 28, 2025Updated last year
- Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.☆186Sep 9, 2026Updated last month
- VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies☆153Sep 8, 2026Updated last month
- GTDB taxonomy taxdump files with trackable TaxIds☆64Apr 18, 2026Updated 5 months ago
- Reorients assembled microbial sequences☆145Jun 30, 2026Updated 3 months ago
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆77Aug 13, 2026Updated 2 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Remove human reads from a sequencing run☆53Jun 29, 2026Updated 3 months ago
- Bonsai: Fast, flexible taxonomic analysis and classification☆69Apr 9, 2024Updated 2 years ago
- Bifrost graph gene caller.☆102Aug 31, 2026Updated last month
- A Python package for obtaining, parsing and exploring biological taxonomies (GTDB, NCBI, Silva, Greengenes, OTT)☆53May 5, 2026Updated 5 months ago
- Genomic neighbor typing of bacterial pathogens using MinHash☆42Jan 10, 2023Updated 3 years ago
- Quickly search, compare, and analyze genomic and metagenomic data sets.☆556Updated this week
- TAXnomic Profile Aggregation and STAndardisation☆43May 2, 2026Updated 5 months ago
- Rapid comparison and dereplication of genomes☆358Updated this week
- Build a partitioned pangenome graph from microbial genomes☆312Oct 6, 2026Updated last week
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.☆234May 9, 2026Updated 5 months ago
- A high-resolution long-read metagenome assembler for even noisy reads. Myloasm assembles strain-resolved, circular + complete genomes fro…☆173Updated this week
- Read alignment statistics for metagenomics☆406Sep 23, 2026Updated 3 weeks ago
- Create a tree using Mash distances☆194Oct 24, 2023Updated 2 years ago
- genome_updater is a bash script that downloads and updates (non-redundant) snapshots of the NCBI Genomes repository (RefSeq/GenBank) with…☆175Oct 7, 2026Updated last week
- Variational autoencoder for metagenomic binning☆333Apr 27, 2026Updated 5 months ago
- frame-shift correction for long-read (meta)genomics☆33Dec 11, 2023Updated 2 years ago
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆686Updated this week
- Precise host read removal☆132Apr 13, 2026Updated 6 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆84Sep 13, 2023Updated 3 years ago
- A bioinformatic toolkit to align genome assemblies into pangenome graphs☆129Aug 19, 2026Updated last month
- GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.☆622Updated this week
- Novelty-inclusive microbial (and now dsDNA phage) community profiling of shotgun metagenomes☆196Sep 8, 2026Updated last month
- Download FASTQ files from SRA or ENA repositories.☆406Oct 7, 2026Updated last week
- Host depletion optimised for clinical metagenomic sequencing applications☆19Jul 9, 2026Updated 3 months ago
- Graph-based assembly phasing☆102Nov 25, 2025Updated 10 months ago