Accurate metagenomic profiling && Fast large-scale sequence/genome searching
☆217Apr 24, 2026Updated last month
Alternatives and similar repositories for kmcp
Users that are interested in kmcp are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆252May 13, 2026Updated last week
- Strain-level abundances estimation in metagenomic samples using variation graphs☆24Jan 29, 2023Updated 3 years ago
- A Practical and Efficient NCBI Taxonomy Toolkit, also supports creating NCBI-style taxdump files for custom taxonomies like GTDB/ICTV☆470Mar 20, 2026Updated 2 months ago
- Scalable creating/updating of metagenome profiling databases☆62Jun 25, 2025Updated 11 months ago
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆304Feb 3, 2026Updated 3 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- ganon2 classifies genomic sequences against large sets of references efficiently, with integrated download and update of databases (refse…☆106Apr 23, 2026Updated last month
- A versatile toolkit for k-mers with taxonomic information☆82Aug 28, 2025Updated 8 months ago
- Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.☆177Apr 6, 2026Updated last month
- VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies☆151May 14, 2026Updated last week
- Precise host read removal☆123Apr 13, 2026Updated last month
- Reorients assembled microbial sequences☆137Aug 21, 2025Updated 9 months ago
- GTDB taxonomy taxdump files with trackable TaxIds☆57Apr 18, 2026Updated last month
- Remove human reads from a sequencing run☆48Apr 27, 2026Updated last month
- Bifrost graph gene caller.☆98Apr 12, 2026Updated last month
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Bonsai: Fast, flexible taxonomic analysis and classification☆70Apr 9, 2024Updated 2 years ago
- A Python package for obtaining, parsing and exploring biological taxonomies (GTDB, NCBI, Silva, Greengenes, OTT)☆51May 5, 2026Updated 3 weeks ago
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆73Dec 1, 2025Updated 5 months ago
- Genomic neighbor typing of bacterial pathogens using MinHash☆42Jan 10, 2023Updated 3 years ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆66Apr 10, 2025Updated last year
- TAXnomic Profile Aggregation and STAndardisation☆44May 2, 2026Updated 3 weeks ago
- Quickly search, compare, and analyze genomic and metagenomic data sets.☆542Updated this week
- Rapid comparison and dereplication of genomes☆341Nov 10, 2025Updated 6 months ago
- MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.☆215May 9, 2026Updated 2 weeks ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Read alignment statistics for metagenomics☆397Apr 8, 2026Updated last month
- Create a tree using Mash distances☆188Oct 24, 2023Updated 2 years ago
- Build a partitioned pangenome graph from microbial genomes☆301May 7, 2026Updated 2 weeks ago
- genome_updater is a bash script that downloads and updates (non-redundant) snapshots of the NCBI Genomes repository (RefSeq/GenBank) with…☆169Apr 22, 2026Updated last month
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆643May 15, 2026Updated last week
- Variational autoencoder for metagenomic binning☆327Apr 27, 2026Updated 3 weeks ago
- frame-shift correction for long-read (meta)genomics☆33Dec 11, 2023Updated 2 years ago
- ☆84Sep 13, 2023Updated 2 years ago
- Novelty-inclusive microbial (and now dsDNA phage) community profiling of shotgun metagenomes☆188May 18, 2026Updated last week
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.☆599Updated this week
- A bioinformatic toolkit to align genome assemblies into pangenome graphs☆125May 5, 2026Updated 3 weeks ago
- geNomad: Identification of mobile genetic elements☆313Mar 29, 2026Updated last month
- Download FASTQ files from SRA or ENA repositories.☆387May 16, 2026Updated last week
- Host depletion optimised for clinical metagenomic sequencing applications☆18May 18, 2026Updated last week
- Finding regions of similarity between plasmids☆17Nov 2, 2022Updated 3 years ago
- Recombination-free trees☆68Apr 26, 2026Updated last month