Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.
☆179Apr 6, 2026Updated 2 months ago
Alternatives and similar repositories for Metabuli
Users that are interested in Metabuli are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆307Feb 3, 2026Updated 4 months ago
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆253May 13, 2026Updated 3 weeks ago
- SemiBin: metagenomics binning with self-supervised deep learning☆164Updated this week
- Universal and efficient structure-based core gene phylogeny with Foldseek and ProstT5☆88Mar 12, 2026Updated 3 months ago
- Accurate metagenomic profiling && Fast large-scale sequence/genome searching☆216Apr 24, 2026Updated last month
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- A hybrid assembly and MAG recovery pipeline (and more!)☆107Jun 5, 2026Updated last week
- Scalable creating/updating of metagenome profiling databases☆62Jun 25, 2025Updated 11 months ago
- UFCG: Universal Fungal Core Genes☆36Jul 29, 2025Updated 10 months ago
- ☆39Apr 9, 2026Updated 2 months ago
- Logan Unitigs and Contigs☆193May 20, 2026Updated 3 weeks ago
- Novelty-inclusive microbial (and now dsDNA phage) community profiling of shotgun metagenomes☆189Updated this week
- MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.☆220May 9, 2026Updated last month
- Precise host read removal☆124Apr 13, 2026Updated last month
- Taxonomic classifier for sequencing reads (bulk and single-cell data, short and long read) using FM-index with run-block compressed BWT.☆91Jun 3, 2026Updated last week
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Bin Chicken - recovery of low abundance and taxonomically targeted metagenome assembled genomes (MAGs) through strategic coassembly☆76Jun 4, 2026Updated last week
- A fast and accurate binning refinement tool to constructs high quality MAGs from the output of multiple binning tools.☆50Feb 5, 2026Updated 4 months ago
- Remove human reads from a sequencing run☆48Jun 5, 2026Updated last week
- Reorients assembled microbial sequences☆137Jun 5, 2026Updated last week
- Assessing the quality of metagenome-derived genome bins using machine learning☆267Mar 20, 2025Updated last year
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆334Jun 3, 2026Updated last week
- PanTax: Strain-level metagenomic profiling using pangenome graphs☆53Mar 26, 2026Updated 2 months ago
- A new high-resolution long-read metagenome assembler for even noisy reads☆154Apr 5, 2026Updated 2 months ago
- Variational autoencoder for metagenomic binning☆328Apr 27, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- geNomad: Identification of mobile genetic elements☆316Mar 29, 2026Updated 2 months ago
- ganon2 classifies genomic sequences against large sets of references efficiently, with integrated download and update of databases (refse…☆106Updated this week
- Read alignment statistics for metagenomics☆399Apr 8, 2026Updated 2 months ago
- 🫧🧬 From fragmented assemblies to high-quality bacteriophage genomes☆85Dec 4, 2025Updated 6 months ago
- A comprehensive prokaryotic genome annotation pipeline☆87Jun 3, 2026Updated last week
- alignment-free coverage calculation for metagenomic binning >100 times faster☆52May 8, 2026Updated last month
- Aligns short reads using dynamic seed size with strobemers☆198Jun 5, 2026Updated last week
- Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!☆189Mar 17, 2026Updated 2 months ago
- Downstream processing of VAMB binning for Viral Elucidation☆55Jul 3, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during…☆85Sep 8, 2025Updated 9 months ago
- ☆37Dec 6, 2023Updated 2 years ago
- 🦠🧬🧑💻📇 Microbial genomes-to-report pipeline☆74Mar 14, 2026Updated 2 months ago
- ☆15Jan 28, 2026Updated 4 months ago
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆650May 15, 2026Updated 3 weeks ago
- Identifying misassemblies via deep learning☆11May 1, 2024Updated 2 years ago
- ☆84Sep 13, 2023Updated 2 years ago