Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.
☆182Jul 22, 2026Updated 3 weeks ago
Alternatives and similar repositories for Metabuli
Users that are interested in Metabuli are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆315Feb 3, 2026Updated 6 months ago
- A new high-resolution long-read metagenome assembler for even noisy reads☆163Jul 3, 2026Updated last month
- Universal and efficient structure-based core gene phylogeny with Foldseek and ProstT5☆91Mar 12, 2026Updated 5 months ago
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆260May 13, 2026Updated 2 months ago
- ☆41Apr 9, 2026Updated 4 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- SemiBin: metagenomics binning with self-supervised deep learning☆174Aug 3, 2026Updated last week
- MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.☆227May 9, 2026Updated 3 months ago
- Taxonomic classifier for sequencing reads (bulk and single-cell data, short and long read) using FM-index with run-block compressed BWT.☆95Updated this week
- Bin Chicken - recovery of low abundance and taxonomically targeted metagenome assembled genomes (MAGs) through strategic coassembly☆78Jul 29, 2026Updated last week
- A hybrid assembly and MAG recovery pipeline (and more!)☆116Aug 5, 2026Updated last week
- Accurate metagenomic profiling && Fast large-scale sequence/genome searching☆219Apr 24, 2026Updated 3 months ago
- Scalable creating/updating of metagenome profiling databases☆62Jun 25, 2025Updated last year
- UFCG: Universal Fungal Core Genes☆36Jul 29, 2025Updated last year
- Amplicon sequencing variants from 16s ONT R10.4 / HiFi long reads☆51Aug 3, 2026Updated last week
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- PanTax: Strain-level metagenomic profiling using pangenome graphs☆55Jun 10, 2026Updated 2 months ago
- Novelty-inclusive microbial (and now dsDNA phage) community profiling of shotgun metagenomes☆195Updated this week
- Fast DNA search and [host] depletion using minimizers☆121Updated this week
- ☆16Jan 28, 2026Updated 6 months ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆69Apr 10, 2025Updated last year
- Logan Unitigs and Contigs☆196Aug 5, 2026Updated last week
- geNomad: Identification of mobile genetic elements☆328Mar 29, 2026Updated 4 months ago
- Precise host read removal☆128Apr 13, 2026Updated 3 months ago
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆335Updated this week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A fast and accurate binning refinement tool to constructs high quality MAGs from the output of multiple binning tools.☆54Jul 10, 2026Updated last month
- Reorients assembled microbial sequences☆143Jun 30, 2026Updated last month
- Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomes☆110Jul 7, 2026Updated last month
- Assessing the quality of metagenome-derived genome bins using machine learning☆275Mar 20, 2025Updated last year
- Remove human reads from a sequencing run☆52Jun 29, 2026Updated last month
- Variational autoencoder for metagenomic binning☆331Apr 27, 2026Updated 3 months ago
- Read alignment statistics for metagenomics☆405Jul 10, 2026Updated last month
- ganon2 classifies genomic sequences against large sets of references efficiently, with integrated download and update of databases (refse…☆106Jul 20, 2026Updated 3 weeks ago
- Instantaneous Metagenome Taxonomic Profiling with MetaKSSD☆27Nov 3, 2025Updated 9 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- 🫧🧬 From fragmented assemblies to high-quality bacteriophage genomes☆84Aug 4, 2026Updated last week
- Meteor is a plateform for quantitative metagenomics profiling of complex ecosystems. Meteor relies on genes catalogue to perform species-…☆41Apr 7, 2026Updated 4 months ago
- Aligns short reads using dynamic seed size with strobemers☆203Updated this week
- alignment-free coverage calculation for metagenomic binning >100 times faster☆56May 8, 2026Updated 3 months ago
- Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!☆189Mar 17, 2026Updated 4 months ago
- A comprehensive prokaryotic genome annotation pipeline☆91Jul 30, 2026Updated last week
- Robust individual and aggregate checksums for nucleotide sequences☆18Mar 3, 2026Updated 5 months ago