leylabmpi / Struo2
Scalable creating/updating of metagenome profiling databases
☆58Updated last year
Related projects ⓘ
Alternatives and complementary repositories for Struo2
- Gene-flank analysis tool☆26Updated 6 months ago
- ☆42Updated 3 years ago
- ☆43Updated last year
- OPAL: Open-community Profiling Assessment tooL☆27Updated 3 months ago
- GTDB taxonomy taxdump files with trackable TaxIds☆49Updated 7 months ago
- Improvement of metagenome-assembled genomes☆49Updated 4 years ago
- Detection of incorrectly labeled sequences across kingdoms☆80Updated 2 years ago
- Microbiome classification pipeline☆64Updated 7 months ago
- Phylogeny Enhanded Prediction of PAN-genome☆39Updated 4 years ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆69Updated 3 years ago
- IslandPath standalone software☆31Updated last year
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆25Updated last week
- Identify phage regions in bacterial genomes for masking purposes☆30Updated 5 years ago
- Graph-based assembly phasing☆66Updated 3 weeks ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆43Updated last year
- Snakemake pipeline calculating KEGG orthologue abundance in metagenomic sequence data.☆24Updated last month
- ☆18Updated 3 months ago
- Recombination-free trees☆56Updated last year
- Strain Resolution ON Graphs☆47Updated last year
- Split Kmer Analysis☆63Updated 2 years ago
- Ley Lab MetaGenome Profiler DataBase generator☆47Updated 2 years ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆53Updated last year
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆50Updated last week
- A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing☆39Updated 3 months ago
- A python library for predicting phage lifestyle based on genome sequence☆35Updated last year
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 3 years ago
- MAG Circularization Method☆33Updated 2 years ago
- SHOOT.bio - the phylogenetic search engine☆24Updated last year
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆25Updated last month
- Inferring bacterial recombination rates from large-scale sequencing datasets.☆41Updated last year