Scalable creating/updating of metagenome profiling databases
☆62Jun 25, 2025Updated last year
Alternatives and similar repositories for Struo2
Users that are interested in Struo2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Mapping NCBI Genbank accession to GTDB accession☆14Feb 13, 2021Updated 5 years ago
- Linking MAGs with 16S rRNA marker genes☆27Feb 8, 2025Updated last year
- MetagenOmic read Re-Assigner and abundance quantifier☆20Jun 24, 2026Updated last month
- Accurate metagenomic profiling && Fast large-scale sequence/genome searching☆218Apr 24, 2026Updated 3 months ago
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆259May 13, 2026Updated 2 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- GTDB taxonomy taxdump files with trackable TaxIds☆61Apr 18, 2026Updated 3 months ago
- Fast pairwise transmission inference from single genome and/or metagenomic data☆38Updated this week
- A Python package for obtaining, parsing and exploring biological taxonomies (GTDB, NCBI, Silva, Greengenes, OTT)☆51May 5, 2026Updated 2 months ago
- CAMITAX: Taxon labels for microbial genomes☆31Dec 14, 2023Updated 2 years ago
- Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.☆180Apr 6, 2026Updated 3 months ago
- Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!☆189Mar 17, 2026Updated 4 months ago
- FlexTaxD (Flexible Taxonomy Databases) - Create, add, merge different taxonomy sources (QIIME, GTDB, NCBI and more) and create metagenomi…☆68Jun 4, 2026Updated last month
- High-resolution strain-level microbiome composition analysis tool based on reference genomes and k-mers☆44Apr 8, 2024Updated 2 years ago
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆335Jun 3, 2026Updated last month
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Python package for detection of chimerism and contamination in prokaryotic genomes.☆93May 11, 2026Updated 2 months ago
- A Hierarchical Approach to Pangenomics Inference☆13Apr 15, 2024Updated 2 years ago
- motus - a tool for marker gene-based OTU (mOTU) profiling☆180Jul 17, 2026Updated last week
- Microbiome classification pipeline☆67May 13, 2025Updated last year
- Ley Lab MetaGenome Profiler DataBase generator☆48Nov 9, 2022Updated 3 years ago
- Computation of average nucleotide identity with the use of MMseqs2☆24Dec 11, 2024Updated last year
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆61May 24, 2026Updated 2 months ago
- MAGinator - Accurate SNV calling and profiling of MAGs☆27Mar 23, 2026Updated 4 months ago
- MAGScoT - a MAG scoring and refinement tool☆48Apr 8, 2026Updated 3 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Novelty-inclusive microbial (and now dsDNA phage) community profiling of shotgun metagenomes☆193Updated this week
- Assessing the quality of metagenome-derived genome bins using machine learning☆271Mar 20, 2025Updated last year
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆314Feb 3, 2026Updated 5 months ago
- Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)☆62Apr 1, 2023Updated 3 years ago
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆76Dec 1, 2025Updated 7 months ago
- A hybrid assembly and MAG recovery pipeline (and more!)☆110Updated this week
- A package to annotate protein sequences☆63Feb 23, 2025Updated last year
- Kraken(2) database based on the GTDB project☆28Dec 20, 2018Updated 7 years ago
- ☆84Sep 13, 2023Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Set of utilities on sequences and BAM files☆27Oct 27, 2021Updated 4 years ago
- Pipeline for major biological analyses.☆35Mar 30, 2022Updated 4 years ago
- alignment-free coverage calculation for metagenomic binning >100 times faster☆54May 8, 2026Updated 2 months ago
- Leviathan: A fast, memory-efficient, and scalable taxonomic and pathway profiler for (pan)genome-resolved metagenomics and metatranscript…☆26Updated this week
- CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…☆233Jul 9, 2026Updated 2 weeks ago
- sensitive and precise assembly of short sequencing reads☆168Oct 11, 2024Updated last year
- the Metagenomic test for Presence Or Absence of Pathways☆13Mar 4, 2019Updated 7 years ago