leylabmpi / Struo2Links
Scalable creating/updating of metagenome profiling databases
☆62Updated 4 months ago
Alternatives and similar repositories for Struo2
Users that are interested in Struo2 are comparing it to the libraries listed below
Sorting:
- ☆40Updated 4 years ago
- ☆45Updated 2 years ago
- Discover and annotate the virome☆53Updated last month
- More scalable dereplication for metagenome assembled genomes☆71Updated last week
- Strain Resolution ON Graphs☆48Updated 2 years ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆69Updated 4 years ago
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆64Updated last month
- GTDB taxonomy taxdump files with trackable TaxIds☆55Updated 6 months ago
- Improvement of metagenome-assembled genomes☆54Updated 5 years ago
- ☆32Updated 2 years ago
- A toolkit for prokaryotic comparative genomics☆51Updated last month
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆64Updated 2 weeks ago
- Ley Lab MetaGenome Profiler DataBase generator☆49Updated 3 years ago
- Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)☆62Updated 2 years ago
- Microbiome classification pipeline☆65Updated 6 months ago
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆22Updated last year
- Automatic eukaryotic taxonomic classification☆28Updated 6 months ago
- alignment-free coverage calculation for metagenomic binning >100 times faster☆48Updated 8 months ago
- Classify metagenomic contigs as eukaryotic or prokaryotic☆41Updated 2 years ago
- Gene-flank analysis tool☆33Updated 11 months ago
- MAG Circularization Method☆32Updated 2 weeks ago
- A tool for removing redundant genomes from a set of assemblies☆77Updated 2 months ago
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆59Updated 2 years ago
- A package to annotate protein sequences☆60Updated 8 months ago
- Split Kmer Analysis☆65Updated 3 years ago
- PLSDB pipeline to collect bacterial plasmids from NCBI☆38Updated last year
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆36Updated 2 months ago
- A pipeline for the macro- and micro-diversity analyses and visualization of metagenomic-derived populations☆43Updated 2 years ago
- KEGG Module Evaluation Tool☆32Updated 2 years ago
- Graph-based assembly phasing☆90Updated 6 months ago