leylabmpi / Struo2Links
Scalable creating/updating of metagenome profiling databases
☆61Updated 3 weeks ago
Alternatives and similar repositories for Struo2
Users that are interested in Struo2 are comparing it to the libraries listed below
Sorting:
- ☆41Updated 4 years ago
- Microbiome classification pipeline☆66Updated 2 months ago
- Ley Lab MetaGenome Profiler DataBase generator☆50Updated 2 years ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆70Updated 3 years ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆45Updated last year
- A tool for removing redundant genomes from a set of assemblies☆71Updated last year
- Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)☆62Updated 2 years ago
- GTDB taxonomy taxdump files with trackable TaxIds☆55Updated 2 months ago
- ☆45Updated 2 years ago
- Gene-flank analysis tool☆28Updated 6 months ago
- Fast k-mer based tool for multi locus sequence typing (MLST)☆46Updated 4 years ago
- Improvement of metagenome-assembled genomes☆53Updated 5 years ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆32Updated 2 years ago
- MAG Circularization Method☆33Updated 3 years ago
- A toolkit for prokaryotic comparative genomics☆49Updated 5 months ago
- MetaCompass: Reference-guided Assembly of Metagenomes☆39Updated 2 weeks ago
- Metagenomics-related extended functionalities to samtools☆21Updated 2 years ago
- tree visualization for tree + annotation data☆39Updated 3 weeks ago
- Discover and annotate the virome☆44Updated last week
- hecatomb is a virome analysis pipeline for analysis of Illumina sequence data☆58Updated last month
- Assessing and Improving the quality of metagenomic assemblies☆29Updated 3 years ago
- A curated list of phage related software and computational resources for phage scientists, bioinformaticians and enthusiasts.☆50Updated 3 years ago
- strain-level analysis tools☆38Updated 8 months ago
- Strain Resolution ON Graphs☆48Updated last year
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆42Updated 4 years ago
- SameStr identifies shared strains between pairs of metagenomic samples based on the similarity of SNV profiles.☆24Updated 3 months ago
- Split Kmer Analysis☆65Updated 3 years ago
- Recombination-free trees☆58Updated 3 months ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆59Updated 2 weeks ago
- Predict prokaryotic host for phage metagenomic sequences☆52Updated 10 months ago