rrwick / Metagenomics-Index-Correction
☆79Updated last year
Alternatives and similar repositories for Metagenomics-Index-Correction:
Users that are interested in Metagenomics-Index-Correction are comparing it to the libraries listed below
- IS mapping software☆53Updated 3 years ago
- A toolbox for comparative genomics.☆100Updated 3 years ago
- a collection of scripts for organising bacterial genomes by species☆76Updated 2 years ago
- A tool for removing redundant genomes from a set of assemblies☆70Updated last year
- GTDB taxonomy taxdump files with trackable TaxIds☆51Updated 9 months ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆93Updated last week
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆69Updated 3 years ago
- Nextflow pipeline to analyze PacBio HiFi full-length 16S data☆66Updated last month
- Bash pipeline for analysis of ONT full-length 16S sequences in QIIME2☆28Updated 4 years ago
- Sorts amplicons from Nanopore sequencing data based on similarity☆34Updated 3 months ago
- Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWoo…☆50Updated 2 years ago
- Fast k-mer based tool for multi locus sequence typing (MLST)☆43Updated 4 years ago
- Reorients assembled microbial sequences☆107Updated 2 weeks ago
- DDBJ Fast Annotation and Submission Tool☆78Updated last month
- Snakemake workflow for metagenomic classification with Kraken2☆65Updated last year
- scripts for estimating bacteria replication rates based on population genome copy number variation☆70Updated 5 years ago
- Assembly methods for nanopore-based metagenomic sequencing: a comparative study☆18Updated 4 years ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆53Updated last year
- A pipeline for running AMRfinderPlus and collating results into functional classes☆73Updated 5 months ago
- tools for assessing the accuracy of genome assemblies☆34Updated 9 months ago
- Synteny Imager☆60Updated 5 months ago
- Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes☆41Updated last month
- ☆52Updated 3 years ago
- Insertion sequences (Insertion Element) [https://en.wikipedia.org/wiki/Insertion_sequence] collected from ISfinder (https://isfinder.biot…☆62Updated 4 years ago
- Foreign Contamination Screening caller scripts and documentation☆117Updated 2 months ago
- Split Kmer Analysis☆63Updated 2 years ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆45Updated last year
- A scalable bacterial genome assembly, annotation and analysis pipeline☆71Updated last year
- Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)☆62Updated last year
- A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing☆44Updated last week