rrwick / Metagenomics-Index-Correction
☆81Updated last year
Alternatives and similar repositories for Metagenomics-Index-Correction:
Users that are interested in Metagenomics-Index-Correction are comparing it to the libraries listed below
- a collection of scripts for organising bacterial genomes by species☆76Updated 3 years ago
- Bash pipeline for analysis of ONT full-length 16S sequences in QIIME2☆29Updated 5 years ago
- DDBJ Fast Annotation and Submission Tool☆80Updated 2 months ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆70Updated 3 years ago
- IS mapping software☆53Updated 3 years ago
- A tool for removing redundant genomes from a set of assemblies☆71Updated last year
- GTDB taxonomy taxdump files with trackable TaxIds☆52Updated last year
- Sorts amplicons from Nanopore sequencing data based on similarity☆36Updated last month
- Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWoo…☆54Updated 3 years ago
- Assembly methods for nanopore-based metagenomic sequencing: a comparative study☆18Updated 4 years ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆53Updated last year
- scripts for estimating bacteria replication rates based on population genome copy number variation☆72Updated 5 years ago
- Reorients assembled microbial sequences☆116Updated last month
- Convert GTDB taxonomy to NCBI taxdump format☆68Updated last year
- Synteny Imager☆61Updated 8 months ago
- Insertion sequences (Insertion Element) [https://en.wikipedia.org/wiki/Insertion_sequence] collected from ISfinder (https://isfinder.biot…☆67Updated 4 years ago
- tools for assessing the accuracy of genome assemblies☆34Updated last year
- Snakemake workflow for metagenomic classification with Kraken2☆65Updated last year
- Fast k-mer based tool for multi locus sequence typing (MLST)☆44Updated 4 years ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆45Updated last year
- A pipeline for running AMRfinderPlus and collating results into functional classes☆76Updated 8 months ago
- Adapter trimmer for Oxford Nanopore reads using ab initio method☆40Updated 5 months ago
- Split Kmer Analysis☆63Updated 2 years ago
- Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)☆62Updated 2 years ago
- reference-based long read assemblies of bacterial genomes☆48Updated 3 years ago
- Kraken output generates a report for each datasets, this script takes these individual output and combines it to one file, where each col…☆23Updated 9 months ago
- post processing of bacterial pangenome gene presence/absence matrices☆60Updated 2 months ago
- ☆52Updated 3 years ago
- This is the source code for multisamples ARGs profiling using SARG2.0 database☆46Updated 4 years ago
- Long-read mock community experiments☆105Updated 3 years ago