rrwick / Metagenomics-Index-Correction
☆80Updated last year
Alternatives and similar repositories for Metagenomics-Index-Correction:
Users that are interested in Metagenomics-Index-Correction are comparing it to the libraries listed below
- a collection of scripts for organising bacterial genomes by species☆76Updated 2 years ago
- IS mapping software☆53Updated 3 years ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆70Updated 3 years ago
- Sorts amplicons from Nanopore sequencing data based on similarity☆34Updated 4 months ago
- DDBJ Fast Annotation and Submission Tool☆79Updated this week
- A tool for generating consensus long-read assemblies for bacterial genomes☆102Updated this week
- GTDB taxonomy taxdump files with trackable TaxIds☆52Updated 10 months ago
- Insertion sequences (Insertion Element) [https://en.wikipedia.org/wiki/Insertion_sequence] collected from ISfinder (https://isfinder.biot…☆63Updated 4 years ago
- A tool for removing redundant genomes from a set of assemblies☆70Updated last year
- Bash pipeline for analysis of ONT full-length 16S sequences in QIIME2☆29Updated 5 years ago
- Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWoo…☆52Updated 2 years ago
- Assembly methods for nanopore-based metagenomic sequencing: a comparative study☆18Updated 4 years ago
- Reorients assembled microbial sequences☆112Updated 2 weeks ago
- This is the source code for multisamples ARGs profiling using SARG2.0 database☆46Updated 4 years ago
- post processing of bacterial pangenome gene presence/absence matrices☆58Updated this week
- FlexTaxD (Flexible Taxonomy Databases) - Create, add, merge different taxonomy sources (QIIME, GTDB, NCBI and more) and create metagenomi…☆65Updated this week
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆118Updated last month
- scripts for estimating bacteria replication rates based on population genome copy number variation☆70Updated 5 years ago
- MTBseq is an automated pipeline for mapping, variant calling and detection of resistance mediating and phylogenetic variants from illumin…☆42Updated 6 months ago
- Fast k-mer based tool for multi locus sequence typing (MLST)☆43Updated 4 years ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆53Updated last year
- A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing☆45Updated last month
- A pipeline for running AMRfinderPlus and collating results into functional classes☆74Updated 6 months ago
- Synteny Imager☆60Updated 6 months ago
- PlasmidID is a mapping-based, assembly-assisted plasmid identification tool that analyzes and gives graphic solution for plasmid identifi…☆40Updated 3 years ago
- A tool for drawing ANI clustermap between all-vs-all microbial genomes☆74Updated 5 months ago
- From genomes to phenotypes: Traitar, the microbial trait analyzer☆57Updated 5 years ago
- Prediction of prophages from bacterial genomes☆76Updated last year
- Snakemake workflow for metagenomic classification with Kraken2☆65Updated last year
- Horizontal gene transfer (HGT) identification pipeline☆56Updated last year