CAMISIM: Simulating metagenomes and microbial communities
☆226Jun 24, 2026Updated last week
Alternatives and similar repositories for CAMISIM
Users that are interested in CAMISIM are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Rapid comparison and dereplication of genomes☆347Nov 10, 2025Updated 7 months ago
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆312Feb 3, 2026Updated 4 months ago
- motus - a tool for marker gene-based OTU (mOTU) profiling☆177Jun 16, 2026Updated 2 weeks ago
- geNomad: Identification of mobile genetic elements☆318Mar 29, 2026Updated 3 months ago
- A sequencing simulator☆225May 20, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆254May 13, 2026Updated last month
- Variational autoencoder for metagenomic binning☆328Apr 27, 2026Updated 2 months ago
- GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.☆609May 20, 2026Updated last month
- PanTax: Strain-level metagenomic profiling using pangenome graphs☆53Jun 10, 2026Updated 3 weeks ago
- Accurate metagenomic profiling && Fast large-scale sequence/genome searching☆217Apr 24, 2026Updated 2 months ago
- Read alignment statistics for metagenomics☆399Updated this week
- Bioinformatics program inStrain☆190Mar 12, 2026Updated 3 months ago
- A hybrid assembly and MAG recovery pipeline (and more!)☆109Updated this week
- Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species i…☆354Mar 16, 2026Updated 3 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Assessing the quality of metagenome-derived genome bins using machine learning☆268Mar 20, 2025Updated last year
- ☆105Updated this week
- A complete pipeline for metagenomic analysis☆446Updated this week
- TAXnomic Profile Aggregation and STAndardisation☆44May 2, 2026Updated 2 months ago
- Novelty-inclusive microbial (and now dsDNA phage) community profiling of shotgun metagenomes☆190Updated this week
- KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files☆376Aug 1, 2025Updated 11 months ago
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆333Jun 3, 2026Updated 3 weeks ago
- ATLAS - Three commands to start analyzing your metagenome data☆405May 28, 2026Updated last month
- Woltka: a versatile meta'omic data classifier☆80Sep 8, 2025Updated 9 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!☆189Mar 17, 2026Updated 3 months ago
- Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on h…☆423May 20, 2026Updated last month
- CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…☆231Apr 1, 2026Updated 3 months ago
- MGnify genome analysis pipeline☆113Updated this week
- Nanopore sequence read simulator☆305Mar 12, 2026Updated 3 months ago
- A Practical and Efficient NCBI Taxonomy Toolkit, also supports creating NCBI-style taxdump files for custom taxonomies like GTDB/ICTV☆474May 28, 2026Updated last month
- alignment-free coverage calculation for metagenomic binning >100 times faster☆52May 8, 2026Updated last month
- Build a partitioned pangenome graph from microbial genomes☆304Updated this week
- 🌈 Interactive analysis of metagenomics data☆453Sep 17, 2025Updated 9 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- A modular end-to-end suite for in silico recovery, clustering, and analysis of prokaryotic, microeukaryotic, and viral genomes from metag…☆102Apr 27, 2026Updated 2 months ago
- hybrid assembly pipeline for bacterial genomes☆645Jul 25, 2024Updated last year
- Snakemake pipeline for simulating shotgun metagenomic samples☆30Mar 13, 2026Updated 3 months ago
- Precise phylogenetic analysis of microbial isolates and genomes from metagenomes☆168Jun 10, 2026Updated 3 weeks ago
- MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis☆472Jul 28, 2023Updated 2 years ago
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆410Mar 2, 2026Updated 4 months ago
- CAMITAX: Taxon labels for microbial genomes☆31Dec 14, 2023Updated 2 years ago