CAMI-challenge / CAMISIM
CAMISIM: Simulating metagenomes and microbial communities
☆198Updated 7 months ago
Alternatives and similar repositories for CAMISIM:
Users that are interested in CAMISIM are comparing it to the libraries listed below
- Rapid comparison and dereplication of genomes☆280Updated 3 months ago
- An updated pipeline for pangenome investigation☆288Updated 3 weeks ago
- Pan-genome wide association studies☆191Updated 9 months ago
- Processing pipeline for pan-genome visulization and exploration☆138Updated last year
- Run_dbcan V4, using genomes/metagenomes/proteomes of any assembled organisms (prokaryotes, fungi, plants, animals, viruses) to search for…☆150Updated 2 months ago
- Bacterial ribosomal RNA predictor☆238Updated last year
- Bioinformatics program inStrain☆161Updated last week
- CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…☆205Updated 3 months ago
- Tools and pipelines tailored to using PacBio HiFi Reads for metagenomics☆183Updated last month
- customizable pipeline to identify viral sequences from (meta)genomic data☆241Updated 3 months ago
- Pipeline for metabolic annotation of microbial genomes☆143Updated this week
- Precise phylogenetic analysis of microbial isolates and genomes from metagenomes☆135Updated 3 months ago
- Scan contig files against PubMLST typing schemes☆220Updated 2 years ago
- A user-friendly workflow for phylogenomics☆209Updated this week
- geNomad: Identification of mobile genetic elements☆224Updated last week
- Scans genome contigs against the ResFinder, PlasmidFinder, and PointFinder databases.☆141Updated 3 months ago
- fast phage annotation program☆158Updated 2 months ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆317Updated 9 months ago
- Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets☆197Updated 7 months ago
- A tool to circularize genome assemblies☆239Updated 11 months ago
- Assessing the quality of metagenome-derived genome bins using machine learning☆199Updated this week
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆269Updated 3 weeks ago
- bioBakery workflows is a collection of workflows and tasks for executing common microbial community analyses using standardized, validate…☆110Updated 2 months ago
- DAS Tool☆146Updated 10 months ago
- breseq is a computational pipeline for finding mutations relative to a reference sequence in short-read DNA resequencing data. It is inte…☆159Updated last week
- HUMAnN is the next generation of HUMAnN 1.0 (HMP Unified Metabolic Analysis Network).☆189Updated 7 months ago
- MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies☆140Updated 5 months ago
- Quality control tool on metagenomic and metatranscriptomic sequencing data, especially data from microbiome experiments.☆116Updated this week
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆215Updated last week
- Metagenomic classification of long-read sequencing data☆77Updated last week