CAMI-challenge / CAMISIMLinks
CAMISIM: Simulating metagenomes and microbial communities
☆221Updated this week
Alternatives and similar repositories for CAMISIM
Users that are interested in CAMISIM are comparing it to the libraries listed below
Sorting:
- A user-friendly workflow for phylogenomics☆225Updated last week
- CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…☆223Updated 3 weeks ago
- Processing pipeline for pan-genome visulization and exploration☆143Updated 2 years ago
- Bioinformatics program inStrain☆181Updated 9 months ago
- Bacterial ribosomal RNA predictor☆279Updated last month
- Tools and pipelines tailored to using PacBio HiFi Reads for metagenomics☆199Updated last week
- Rapid comparison and dereplication of genomes☆326Updated 3 months ago
- Build a partitioned pangenome graph from microbial genomes☆292Updated last month
- Pan-genome wide association studies☆207Updated last year
- Precise phylogenetic analysis of microbial isolates and genomes from metagenomes☆158Updated 7 months ago
- A tool to circularize genome assemblies☆252Updated last year
- Pipeline for metabolic annotation of microbial genomes☆150Updated 10 months ago
- BSR-Based Allele Calling Algorithm☆148Updated last week
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆287Updated last week
- An updated pipeline for pangenome investigation☆341Updated 3 weeks ago
- Metagenomic classification of long-read sequencing data☆100Updated 2 weeks ago
- Scans genome contigs against the ResFinder, PlasmidFinder, and PointFinder databases.☆183Updated this week
- DAS Tool☆169Updated last year
- Fast and accurately polish the genome generated by long reads.☆240Updated last year
- Application and Python module for average nucleotide identity analyses of microbes.☆217Updated 7 months ago
- Assessing the quality of metagenome-derived genome bins using machine learning☆247Updated 10 months ago
- HUMAnN is the next generation of HUMAnN 1.0 (HMP Unified Metabolic Analysis Network).☆232Updated 3 weeks ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆338Updated 4 months ago
- Run_dbcan V4, using genomes/metagenomes/proteomes of any assembled organisms (prokaryotes, fungi, plants, animals, viruses) to search for…☆158Updated 9 months ago
- Pairwise SNP distance matrix from a FASTA sequence alignment☆151Updated last month
- Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets☆208Updated last year
- geNomad: Identification of mobile genetic elements☆286Updated 3 months ago
- Classifier for metagenomic sequences☆270Updated 7 months ago
- Short Read Sequence Typing for Bacterial Pathogens☆145Updated 4 years ago
- Virus Identification By iteRative ANnoTation☆184Updated last year