CAMI-challenge / CAMISIMLinks
CAMISIM: Simulating metagenomes and microbial communities
☆211Updated last week
Alternatives and similar repositories for CAMISIM
Users that are interested in CAMISIM are comparing it to the libraries listed below
Sorting:
- Bioinformatics program inStrain☆174Updated 2 months ago
- A user-friendly workflow for phylogenomics☆214Updated last week
- Run_dbcan V4, using genomes/metagenomes/proteomes of any assembled organisms (prokaryotes, fungi, plants, animals, viruses) to search for…☆153Updated 2 months ago
- Rapid comparison and dereplication of genomes☆302Updated last month
- Precise phylogenetic analysis of microbial isolates and genomes from metagenomes☆150Updated last month
- Scans genome contigs against the ResFinder, PlasmidFinder, and PointFinder databases.☆163Updated 7 months ago
- CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…☆217Updated last week
- Pipeline for metabolic annotation of microbial genomes☆149Updated 3 months ago
- Tools and pipelines tailored to using PacBio HiFi Reads for metagenomics☆191Updated 2 months ago
- An updated pipeline for pangenome investigation☆307Updated 4 months ago
- Bacterial ribosomal RNA predictor☆247Updated last year
- Processing pipeline for pan-genome visulization and exploration☆140Updated last year
- Informed prediction and analysis of bacterial metabolic pathways and genome-scale networks☆184Updated 2 weeks ago
- Pan-genome wide association studies☆198Updated last year
- Build a partitioned pangenome graph from microbial genomes☆271Updated last week
- An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within micro…☆243Updated 11 months ago
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆288Updated last week
- MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies☆152Updated 3 months ago
- geNomad: Identification of mobile genetic elements☆249Updated this week
- BSR-Based Allele Calling Algorithm☆148Updated 3 weeks ago
- A tool to circularize genome assemblies☆243Updated last year
- Similarity networks of biosynthetic gene clusters☆119Updated last week
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆233Updated last week
- DAS Tool☆154Updated last year
- Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets☆202Updated 10 months ago
- Assessing the quality of metagenome-derived genome bins using machine learning☆217Updated 3 months ago
- customizable pipeline to identify viral sequences from (meta)genomic data☆260Updated 7 months ago
- HUMAnN is the next generation of HUMAnN 1.0 (HMP Unified Metabolic Analysis Network).☆206Updated 11 months ago
- Virus Identification By iteRative ANnoTation☆171Updated last year
- A tool for generating consensus long-read assemblies for bacterial genomes☆325Updated last year