CAMISIM: Simulating metagenomes and microbial communities
☆223Apr 1, 2026Updated last week
Alternatives and similar repositories for CAMISIM
Users that are interested in CAMISIM are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Rapid comparison and dereplication of genomes☆335Nov 10, 2025Updated 5 months ago
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆301Feb 3, 2026Updated 2 months ago
- motus - a tool for marker gene-based OTU (mOTU) profiling☆173Mar 13, 2026Updated last month
- A sequencing simulator☆222Mar 25, 2026Updated 2 weeks ago
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆246Oct 12, 2025Updated 6 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- geNomad: Identification of mobile genetic elements☆301Mar 29, 2026Updated 2 weeks ago
- GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.☆587Feb 21, 2026Updated last month
- Variational autoencoder for metagenomic binning☆319Feb 23, 2026Updated last month
- Accurate metagenomic profiling && Fast large-scale sequence/genome searching☆208Sep 22, 2023Updated 2 years ago
- PanTax: Strain-level metagenomic profiling using pangenome graphs☆50Mar 26, 2026Updated 2 weeks ago
- Read alignment statistics for metagenomics☆396Updated this week
- Bioinformatics program inStrain☆184Mar 12, 2026Updated last month
- A hybrid assembly and MAG recovery pipeline (and more!)☆106Mar 31, 2026Updated last week
- Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species i…☆341Mar 16, 2026Updated 3 weeks ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- Assessing the quality of metagenome-derived genome bins using machine learning☆252Mar 20, 2025Updated last year
- Novelty-inclusive microbial (and now dsDNA phage) community profiling of shotgun metagenomes☆185Updated this week
- A complete pipeline for metagenomic analysis☆439Mar 11, 2026Updated last month
- TAXnomic Profile Aggregation and STAndardisation☆42Nov 18, 2025Updated 4 months ago
- KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files☆372Aug 1, 2025Updated 8 months ago
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆328Mar 30, 2026Updated last week
- ATLAS - Three commands to start analyzing your metagenome data☆404Nov 28, 2025Updated 4 months ago
- Woltka: a versatile meta'omic data classifier☆77Sep 8, 2025Updated 7 months ago
- Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!☆181Mar 17, 2026Updated 3 weeks ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…☆228Apr 1, 2026Updated last week
- MGnify genome analysis pipeline☆109Apr 1, 2026Updated last week
- ☆90Mar 25, 2026Updated 2 weeks ago
- Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on h…☆408Mar 26, 2026Updated 2 weeks ago
- Nanopore sequence read simulator☆296Mar 12, 2026Updated last month
- A Practical and Efficient NCBI Taxonomy Toolkit, also supports creating NCBI-style taxdump files for custom taxonomies like GTDB/ICTV☆469Mar 20, 2026Updated 3 weeks ago
- 🌈 Interactive analysis of metagenomics data☆447Sep 17, 2025Updated 6 months ago
- alignment-free coverage calculation for metagenomic binning >100 times faster☆50Mar 13, 2025Updated last year
- Build a partitioned pangenome graph from microbial genomes☆296Mar 30, 2026Updated last week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- A modular end-to-end suite for in silico recovery, clustering, and analysis of prokaryotic, microeukaryotic, and viral genomes from metag…☆100Apr 3, 2026Updated last week
- hybrid assembly pipeline for bacterial genomes☆635Jul 25, 2024Updated last year
- Snakemake pipeline for simulating shotgun metagenomic samples☆29Mar 13, 2026Updated last month
- Precise phylogenetic analysis of microbial isolates and genomes from metagenomes☆164Feb 13, 2026Updated last month
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆406Mar 2, 2026Updated last month
- MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis☆467Jul 28, 2023Updated 2 years ago
- CAMITAX: Taxon labels for microbial genomes☆31Dec 14, 2023Updated 2 years ago