Single cell omics biology annotations
☆62Sep 2, 2026Updated 2 weeks ago
Alternatives and similar repositories for cytopus
Users that are interested in cytopus are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Supervised Pathway DEConvolution of InTerpretable Gene ProgRAms☆203Jan 30, 2026Updated 7 months ago
- Interactive visualisation of CellphoneDB results☆13Jan 15, 2025Updated last year
- Code and example of the D-SPIN framework☆43Aug 5, 2026Updated last month
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆199Aug 24, 2026Updated 3 weeks ago
- ☆68Sep 13, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Querying cellular states and programs by learning representations of gene sets☆16Nov 2, 2025Updated 10 months ago
- A single-cell analysis toolkit to jointly analyze samples from distinct conditions☆37Apr 2, 2025Updated last year
- Context specific and dynamic gene regulatory network reconstruction and analysis☆132Aug 3, 2026Updated last month
- ☆47Apr 27, 2026Updated 4 months ago
- Source code and data supporting "Evaluating measures of association for single-cell transcriptomics"☆17Feb 25, 2019Updated 7 years ago
- k-NN-based mapping of cells across representations to transfer labels, embeddings, and expression values.☆16Updated this week
- A Bayesian model for compositional single-cell data analysis☆203Jan 13, 2026Updated 8 months ago
- ☆69Apr 22, 2026Updated 5 months ago
- R package implementation of Milo for testing for differential abundance in KNN graphs☆448Aug 25, 2026Updated 3 weeks ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Python library for plotting Cellphonedb results. Ported from ktplots R package.☆57Jun 29, 2026Updated 2 months ago
- Molecular interactions inference from single-cell multi-omics data☆33May 7, 2026Updated 4 months ago
- Gene set scoring for single-cell data☆209Sep 8, 2026Updated 2 weeks ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆59May 5, 2021Updated 5 years ago
- Gene regulatory network reconstruction from pseudotemporal single-cell gene expression data☆11Jul 6, 2026Updated 2 months ago
- Aligning gene expression trajectories of single-cell reference and query systems☆93Jul 28, 2026Updated last month
- Single-Cell Inference of Class Switch Recombination☆25Jun 19, 2026Updated 3 months ago
- ☆68May 17, 2026Updated 4 months ago
- SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) a…☆264Jan 16, 2026Updated 8 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Conveniently process a dictionary of anndatas☆23Apr 17, 2026Updated 5 months ago
- Analysis of cell-cell communication at single-cell resolution☆108Sep 10, 2024Updated 2 years ago
- ☆13Mar 20, 2024Updated 2 years ago
- Single cell proteomics data processing☆33Sep 6, 2026Updated 2 weeks ago
- Implements *CellAnnotator (aka *CAT/starCAT), annotating scRNA-Seq with predefined gene expression programs☆111Updated this week
- Interoperability between SpatialData and the Xenium Explorer☆27Jul 31, 2024Updated 2 years ago
- Gene Expression Decomposition and Integration☆21Feb 9, 2026Updated 7 months ago
- A tool for semi-automatic cell type classification☆504May 22, 2026Updated 4 months ago
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆126Apr 26, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- gene regulatory network reconstruction from scRNA-Seq☆25Feb 10, 2022Updated 4 years ago
- Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)☆15Jan 27, 2023Updated 3 years ago
- NicheDE is a method that detects context dependent changes in gene expression in spatial transcriptomic data.☆23Jun 10, 2025Updated last year
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆67Apr 14, 2024Updated 2 years ago
- This is the alpha version of the CellOracle package☆500Apr 30, 2026Updated 4 months ago
- Latent Embedding Multivariate Regression☆103Jul 29, 2026Updated last month
- CIARA (Cluster Independent Algorithm for the identification of markers of RAre cell types) is an R package that identifies potential mar…☆18Jan 1, 2026Updated 8 months ago