wallet-maker / cytopusLinks
Single cell omics biology annotations
☆51Updated 4 months ago
Alternatives and similar repositories for cytopus
Users that are interested in cytopus are comparing it to the libraries listed below
Sorting:
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 2 years ago
- Gene group activity utility functions for Scanpy☆84Updated 8 months ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆63Updated 3 weeks ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆63Updated last month
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Updated 7 months ago
- Python implementation of Milo for differential abundance testing on KNN graph☆74Updated 6 months ago
- Predict RNA velocity through deep learning☆70Updated last year
- ☆56Updated 2 months ago
- ☆54Updated 9 months ago
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆79Updated 5 months ago
- Context specific and dynamic gene regulatory network reconstruction and analysis☆121Updated last month
- ☆29Updated 5 months ago
- R implementation of GeneTrajectory☆63Updated last year
- pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.☆73Updated 3 weeks ago
- Functional Inference of Gene Regulation☆46Updated last year
- Gene regulatory network containing signed transcription factor-target gene interactions☆86Updated 2 months ago
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆61Updated last year
- Analysis of cell-cell communication at single-cell resolution☆104Updated 11 months ago
- This repository contains our CellTag workflow, as deployed in our 2018 Biddy et al., Nature paper.☆32Updated last year
- Aligning gene expression trajectories of single-cell reference and query systems☆73Updated 2 weeks ago
- ☆82Updated last week
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆29Updated 8 months ago
- All code associated with manuscript detailing scATAC and scRNA-seq following stimulus of PBMCs☆41Updated 2 years ago
- Multi-omic velocity inference☆110Updated 10 months ago
- Non-parametric density inference for single-cell analysis.☆72Updated 3 months ago
- ☆46Updated last year
- ☆37Updated 2 months ago
- code repository for Lagattuta et al. "Repertoire analyses reveal T cell receptor sequence features that influence T cell fate." Nat. Imm.…☆13Updated 6 months ago
- ACTIONet single-cell analysis framework☆42Updated 11 months ago
- Using TCR and expression for sequence embedding☆58Updated last week