Single cell omics biology annotations
☆59Jun 5, 2026Updated last week
Alternatives and similar repositories for cytopus
Users that are interested in cytopus are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Supervised Pathway DEConvolution of InTerpretable Gene ProgRAms☆197Jan 30, 2026Updated 4 months ago
- Interactive visualisation of CellphoneDB results☆13Jan 15, 2025Updated last year
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆190Mar 27, 2025Updated last year
- Querying cellular states and programs by learning representations of gene sets☆16Nov 2, 2025Updated 7 months ago
- ☆65Sep 13, 2024Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A single-cell analysis toolkit to jointly analyze samples from distinct conditions☆37Apr 2, 2025Updated last year
- ☆67Apr 22, 2026Updated last month
- Context specific and dynamic gene regulatory network reconstruction and analysis☆128Apr 14, 2026Updated 2 months ago
- A Bayesian model for compositional single-cell data analysis☆198Jan 13, 2026Updated 5 months ago
- R package implementation of Milo for testing for differential abundance in KNN graphs☆434May 11, 2026Updated last month
- Molecular interactions inference from single-cell multi-omics data☆31May 7, 2026Updated last month
- Python library for plotting Cellphonedb results. Ported from ktplots R package.☆57May 29, 2026Updated 2 weeks ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆59May 5, 2021Updated 5 years ago
- Gene set scoring for single-cell data☆196Apr 29, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Gene regulatory network reconstruction from pseudotemporal single-cell gene expression data☆11Jul 11, 2024Updated last year
- Implements *CellAnnotator (aka *CAT/starCAT), annotating scRNA-Seq with predefined gene expression programs☆103May 20, 2026Updated 3 weeks ago
- Aligning gene expression trajectories of single-cell reference and query systems☆88Aug 10, 2025Updated 10 months ago
- ☆33Apr 3, 2026Updated 2 months ago
- Source code and data supporting "Evaluating measures of association for single-cell transcriptomics"☆17Feb 25, 2019Updated 7 years ago
- ☆67May 17, 2026Updated 3 weeks ago
- Code and example of the D-SPIN framework☆36May 12, 2026Updated last month
- Analysis of cell-cell communication at single-cell resolution☆107Sep 10, 2024Updated last year
- SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) a…☆257Jan 16, 2026Updated 4 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A tool for semi-automatic cell type classification☆487May 22, 2026Updated 3 weeks ago
- 🏃 The go-to single-cell Foundation Model☆148May 20, 2026Updated 3 weeks ago
- ☆12Mar 20, 2024Updated 2 years ago
- Single-Cell Inference of Class Switch Recombination☆23Feb 11, 2026Updated 4 months ago
- Interoperability between SpatialData and the Xenium Explorer☆26Jul 31, 2024Updated last year
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆122Apr 26, 2025Updated last year
- Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)☆14Jan 27, 2023Updated 3 years ago
- NicheDE is a method that detects context dependent changes in gene expression in spatial transcriptomic data.☆24Jun 10, 2025Updated last year
- gene regulatory network reconstruction from scRNA-Seq☆25Feb 10, 2022Updated 4 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆66Apr 14, 2024Updated 2 years ago
- marker-based purification of cell types from single-cell RNA-seq datasets☆142Mar 13, 2026Updated 3 months ago
- A method for calculating single cell entropy and reconstructing cell differentiation lineage using single-cell RNA-seq data☆10May 26, 2023Updated 3 years ago
- This is the alpha version of the CellOracle package☆462Apr 30, 2026Updated last month
- CIARA (Cluster Independent Algorithm for the identification of markers of RAre cell types) is an R package that identifies potential mar…☆17Jan 1, 2026Updated 5 months ago
- An R package for single-cell CRISPR screen data analysis emphasizing statistical rigor, massive scalability, and ease of use.☆38Updated this week
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆58Jan 29, 2026Updated 4 months ago