Single cell omics biology annotations
☆55Feb 26, 2026Updated last month
Alternatives and similar repositories for cytopus
Users that are interested in cytopus are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Supervised Pathway DEConvolution of InTerpretable Gene ProgRAms☆193Jan 30, 2026Updated 2 months ago
- Interactive visualisation of CellphoneDB results☆12Jan 15, 2025Updated last year
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆185Mar 27, 2025Updated last year
- ☆65Sep 13, 2024Updated last year
- A single-cell analysis toolkit to jointly analyze samples from distinct conditions☆35Apr 2, 2025Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆62Dec 8, 2025Updated 4 months ago
- Molecular interactions inference from single-cell multi-omics data☆31Jan 14, 2026Updated 2 months ago
- Python library for plotting Cellphonedb results. Ported from ktplots R package.☆57Mar 16, 2026Updated 3 weeks ago
- R package implementation of Milo for testing for differential abundance in KNN graphs☆425Updated this week
- Context specific and dynamic gene regulatory network reconstruction and analysis☆128Updated this week
- Gene regulatory network reconstruction from pseudotemporal single-cell gene expression data☆11Jul 11, 2024Updated last year
- A Bayesian model for compositional single-cell data analysis☆194Jan 13, 2026Updated 2 months ago
- Aligning gene expression trajectories of single-cell reference and query systems☆83Aug 10, 2025Updated 8 months ago
- ☆32Apr 3, 2026Updated last week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Source code and data supporting "Evaluating measures of association for single-cell transcriptomics"☆17Feb 25, 2019Updated 7 years ago
- ☆65May 21, 2025Updated 10 months ago
- Code and example of the D-SPIN framework☆25Mar 12, 2026Updated last month
- A tool for semi-automatic cell type classification☆464Mar 21, 2026Updated 3 weeks ago
- SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) a…☆251Jan 16, 2026Updated 2 months ago
- Gene set scoring for single-cell data☆189Feb 11, 2026Updated 2 months ago
- ☆12Mar 20, 2024Updated 2 years ago
- Interoperability between SpatialData and the Xenium Explorer☆25Jul 31, 2024Updated last year
- Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)☆13Jan 27, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- NicheDE is a method that detects context dependent changes in gene expression in spatial transcriptomic data.☆24Jun 10, 2025Updated 10 months ago
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆65Apr 14, 2024Updated last year
- This is the alpha version of the CellOracle package☆439Feb 3, 2026Updated 2 months ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆58May 5, 2021Updated 4 years ago
- Querying cellular states and programs by learning representations of gene sets☆16Nov 2, 2025Updated 5 months ago
- CIARA (Cluster Independent Algorithm for the identification of markers of RAre cell types) is an R package that identifies potential mar…☆16Jan 1, 2026Updated 3 months ago
- An R package for single-cell CRISPR screen data analysis emphasizing statistical rigor, massive scalability, and ease of use.☆36Sep 4, 2025Updated 7 months ago
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆58Jan 29, 2026Updated 2 months ago
- ☆24Aug 20, 2024Updated last year
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Latent Embedding Multivariate Regression☆101Mar 20, 2026Updated 3 weeks ago
- Multi-resolution Variational Inference☆23Mar 16, 2026Updated 3 weeks ago
- Gene Expression Decomposition and Integration☆19Feb 9, 2026Updated 2 months ago
- A Python package for the identification, characterization and comparison of spatial clusters from spatial -omics data.☆167Mar 16, 2026Updated 3 weeks ago
- Identification of viral RdRPs in single-cell RNA sequencing data☆13Mar 12, 2026Updated last month
- Non-parametric density inference for single-cell analysis.☆73Updated this week
- Analysis of cell-cell communication at single-cell resolution☆106Sep 10, 2024Updated last year