DavisLaboratory / scDECAFLinks
Querying cellular states and programs by learning representations of gene sets
☆14Updated last month
Alternatives and similar repositories for scDECAF
Users that are interested in scDECAF are comparing it to the libraries listed below
Sorting:
- Mosaic single cell data integration using non-overlapping features☆37Updated 3 years ago
- Cell-type Relationship Analysis Workflow Done Across Distances☆38Updated 3 weeks ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated last year
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆44Updated 3 months ago
- ☆13Updated 3 months ago
- RNA-velocity informed embeddings for visualizing cellular trajectories☆44Updated 3 years ago
- Supplementary information for "Population-level comparisons of gene regulatory networks modeled on high-throughput single-cell transcript…☆10Updated last year
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆30Updated 9 months ago
- A modular tool for proportion analysis in single-cell sequencing data☆23Updated 2 months ago
- Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.☆37Updated 3 weeks ago
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆26Updated last year
- R package expanding integrative analysis capabilities of Seurat by providing seamless access to popular integration methods and to an int…☆31Updated 3 months ago
- ☆43Updated last month
- R package to infer multicellular programs from single-cell data using multi-omics factor analysis (MOFA)☆11Updated 2 years ago
- ☆61Updated last year
- ☆30Updated 3 years ago
- Ordering gene-expression and functional events in single-cell experiments☆25Updated last year
- Clonalscope is a subclone detection method based on copy number alterations (CNAs) for single-cell and ST tumor sequencing data. Clonalsc…☆24Updated 2 months ago
- NicheDE is a method that detects context dependent changes in gene expression in spatial transcriptomic data.☆23Updated 6 months ago
- A sandbox for benchmarking detection of out-of-reference cells in single-cell genomics data☆13Updated last year
- A record of the analysis pipelines used to create the HTAPP data☆33Updated 7 months ago
- R package for Bioconductor submission☆37Updated 3 years ago
- A repository for benchmarking spatial deconvolution and mapping tools☆35Updated 6 months ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆29Updated 3 years ago
- Projecting RNA measurements onto single cell atlases to extract cell type-specific expression profiles using scProjection☆16Updated 2 years ago
- An R package for visualising cell-cell interactions☆43Updated last year
- iterative clustering pipeline of big single cell datasets.☆35Updated 3 months ago
- Single-cell Mutual Information-based Network Engineering Ranger☆20Updated 3 months ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆29Updated last year
- Scripts from the GBM cellular states paper☆20Updated 4 years ago