DavisLaboratory / scDECAFLinks
Querying cellular states and programs by learning representations of gene sets
☆14Updated last year
Alternatives and similar repositories for scDECAF
Users that are interested in scDECAF are comparing it to the libraries listed below
Sorting:
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 10 months ago
- R package to infer multicellular programs from single-cell data using multi-omics factor analysis (MOFA)☆11Updated 2 years ago
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆30Updated 6 months ago
- Single-cell Mutual Information-based Network Engineering Ranger☆20Updated 3 weeks ago
- ☆13Updated 2 weeks ago
- Mosaic single cell data integration using non-overlapping features☆37Updated 2 years ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆27Updated 3 years ago
- R package expanding integrative analysis capabilities of Seurat by providing seamless access to popular integration methods and to an int…☆31Updated 2 weeks ago
- ☆58Updated last year
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆43Updated 2 weeks ago
- ☆14Updated 3 months ago
- ☆10Updated 3 years ago
- Cell-type Relationship Analysis Workflow Done Across Distances☆36Updated 3 months ago
- Scripts from the GBM cellular states paper☆19Updated 4 years ago
- A repository for benchmarking spatial deconvolution and mapping tools☆34Updated 4 months ago
- RNA-velocity informed embeddings for visualizing cellular trajectories☆45Updated 3 years ago
- R package for Bioconductor submission☆37Updated 2 years ago
- An R wrapper for too-many-cells, for clustering single cells and analyzing cell clade relationships with colorful visualizations.☆26Updated 5 years ago
- ANS_signature_scoring: A gene expression signature scoring Python package.☆16Updated 5 months ago
- ☆48Updated last year
- A modular tool for proportion analysis in single-cell sequencing data☆23Updated last week
- NicheDE is a method that detects context dependent changes in gene expression in spatial transcriptomic data.☆20Updated 3 months ago
- Flexible, probablistic metrics for quality control of scRNA-seq data☆21Updated 2 years ago
- The R package scCODE, a platform for data-specific DE gene detection for scRNA-seq data☆14Updated last year
- Code used to process the data of the HBCA project☆32Updated last year
- An R package for visualising cell-cell interactions☆43Updated last year
- Python code for cross-condition label refinement in single-cell data with HiDDEN☆14Updated 11 months ago
- R package developed for single-cell RNA-seq analysis. It was designed using the Seurat framework, and offers existing and novel single-ce…☆31Updated 2 years ago
- CellRank's reproducibility repository.☆15Updated 3 years ago
- Ordering gene-expression and functional events in single-cell experiments☆23Updated last year