DavisLaboratory / scDECAFLinks
Querying cellular states and programs by learning representations of gene sets
☆14Updated last year
Alternatives and similar repositories for scDECAF
Users that are interested in scDECAF are comparing it to the libraries listed below
Sorting:
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 10 months ago
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆30Updated 5 months ago
- Single-cell Mutual Information-based Network Engineering Ranger☆20Updated this week
- ☆58Updated last year
- Mosaic single cell data integration using non-overlapping features☆37Updated 2 years ago
- Cell-type Relationship Analysis Workflow Done Across Distances☆36Updated 2 months ago
- RNA-velocity informed embeddings for visualizing cellular trajectories☆44Updated 2 years ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆43Updated last week
- An R wrapper for too-many-cells, for clustering single cells and analyzing cell clade relationships with colorful visualizations.☆26Updated 5 years ago
- Overview of the scripts used to analyse the brainimmuneatlas data☆19Updated 4 years ago
- ☆13Updated 2 months ago
- iterative clustering pipeline of big single cell datasets.☆33Updated last week
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆26Updated last year
- Scripts from the GBM cellular states paper☆19Updated 4 years ago
- The R package scCODE, a platform for data-specific DE gene detection for scRNA-seq data☆14Updated last year
- Calculation of Reference/Cluster Similarity Spectrum (RSS/CSS)☆33Updated last year
- R package gathering a set of wrappers to apply various integration methods to Seurat objects (and rate such methods)☆32Updated 3 months ago
- ☆29Updated 3 years ago
- CellRank's reproducibility repository.☆15Updated 3 years ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆55Updated 2 months ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆27Updated 3 years ago
- Difference in Intercellular Communication from scRNA-seq data☆22Updated last year
- Code used to process the data of the HBCA project☆31Updated last year
- R package for Bioconductor submission☆37Updated 2 years ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆35Updated 4 years ago
- Projecting RNA measurements onto single cell atlases to extract cell type-specific expression profiles using scProjection☆15Updated 2 years ago
- ☆56Updated this week
- NicheDE is a method that detects context dependent changes in gene expression in spatial transcriptomic data.☆20Updated 2 months ago
- Automated ingestion and conversion of various single-cell data formats, within and across species☆12Updated 5 months ago
- ANS_signature_scoring: A gene expression signature scoring Python package.☆16Updated 4 months ago