DavisLaboratory / scDECAF
Querying cellular states and programs by learning representations of gene sets
☆12Updated 8 months ago
Alternatives and similar repositories for scDECAF:
Users that are interested in scDECAF are comparing it to the libraries listed below
- Human brain, >200,000 nuclei☆24Updated 3 years ago
- Mosaic single cell data integration using non-overlapping features☆37Updated 2 years ago
- Image processing pipeline for spatial projects☆15Updated last year
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 4 months ago
- Single-cell analysis with non-negative matrix factorization☆44Updated 4 months ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆39Updated last year
- A gene expression signature scoring Python package.☆12Updated 3 months ago
- An R package for visualising cell-cell interactions☆43Updated 7 months ago
- Cell-type Relationship Analysis Workflow Done Across Distances☆31Updated 3 weeks ago
- An r package that works as a wrapper to homologene☆43Updated last year
- ☆29Updated last year
- Flexible, probablistic metrics for quality control of scRNA-seq data☆19Updated 2 years ago
- Implements *CellAnnotator (aka *CAT/starCAT), annotating scRNA-Seq with predefined gene expression programs☆21Updated last month
- An R wrapper for too-many-cells, for clustering single cells and analyzing cell clade relationships with colorful visualizations.☆25Updated 5 years ago
- R implementation of the Reshef and Rumker CNA method (https://github.com/immunogenomics/cna)☆14Updated last year
- cell type deconvolution for multi-condition bulk RNA-seq data☆23Updated 3 years ago
- A post-clustering differential expression (DE) method robust to false-positive inflation caused by double dipping☆25Updated last week
- .h5mu files interface for Seurat☆28Updated last year
- Collection of useful methods for single cell analysis☆14Updated 7 months ago
- Single cell STEM (scSTEM) is a shiny app based R package for visualizing and clustering genes in pseudotime ordered single cell RNA-seq d…☆18Updated 2 years ago
- GEfetch2R - Access Single-cell/Bulk RNA-seq Data from Public Repositories and Benchmark the Subsequent Format Conversion Tools☆35Updated 2 weeks ago
- This repository contains HCA Benchmarking codes☆26Updated 5 years ago
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆25Updated last year
- A repository for benchmarking spatial deconvolution and mapping tools☆33Updated last month
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 3 years ago
- R package for Flexible dot plots☆29Updated 2 years ago
- A re-analysis of the [Single-cell transcriptomic analysis of Alzheimer’s disease](https://www.nature.com/articles/s41586-019-1195-2) usin…☆14Updated last year
- Overview of the scripts used to analyse the brainimmuneatlas data☆19Updated 4 years ago