Querying cellular states and programs by learning representations of gene sets
☆16Nov 2, 2025Updated 11 months ago
Alternatives and similar repositories for scDECAF
Users that are interested in scDECAF are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Helper Functions for LIBD Deconvolution☆11Sep 25, 2026Updated last month
- ☆10Mar 12, 2023Updated 3 years ago
- Count ratio uncertainty modeling base linear regression☆16Sep 23, 2026Updated last month
- An R package to infer cell-cell interactions and clinical values in tumor immune microenvironment through gene pairs.☆26Jun 28, 2024Updated 2 years ago
- ☆17Sep 13, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Efficiently compute robust markers across single-cell datasets☆13Apr 21, 2021Updated 5 years ago
- Complex Heatmaps Using Base Graphics☆17Mar 29, 2026Updated 7 months ago
- ESICCC: A systematic computational framework for evaluation, selection and integration of cell-cell communication inference methods☆13Jan 10, 2024Updated 2 years ago
- Spatial transcriptomics analyses and decoding in R☆27Jul 8, 2026Updated 3 months ago
- Auto-annotations from Mouse brain development☆12Jul 11, 2020Updated 6 years ago
- NMF and complete deconvolution algorithm☆10Sep 21, 2026Updated last month
- R package for Bioconductor submission☆41Dec 8, 2022Updated 3 years ago
- IKAP - Identifying K mAjor cell Population groups in single-cell RNA-seq analysis☆19Mar 16, 2020Updated 6 years ago
- cross-species analysis of cell identities, markers and regulations☆13Jul 11, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆29Sep 4, 2023Updated 3 years ago
- CIARA (Cluster Independent Algorithm for the identification of markers of RAre cell types) is an R package that identifies potential mar…☆18Jan 1, 2026Updated 9 months ago
- Permutect, an incredibly efficient deep learning architecture for somatic and germline variant calling☆15Updated this week
- Framework for analysis of cell-types and Ligand-Receptor cooccurrences☆21Feb 13, 2023Updated 3 years ago
- Characterize gene dynamics over trajectories using GLMs, GEEs, & GLMMs.☆17Mar 3, 2026Updated 7 months ago
- Learning meaningful representations of genes☆22Jul 7, 2025Updated last year
- CCCvelo: Decoding dynamic cell-cell communication-driven cell state transitions in spatial transcriptomics☆13Sep 14, 2026Updated last month
- Cell signatures, with confidence.☆10Jun 1, 2020Updated 6 years ago
- clustering method for single-cell transcriptomics data☆11Oct 11, 2026Updated 2 weeks ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- K-means clustering for large single-cell datasets☆13Feb 10, 2026Updated 8 months ago
- Awesome GRN enhanced AnnData toolkit☆13Feb 19, 2026Updated 8 months ago
- A scalable method to infer fate specific gene regulatory network from single cell gene expression data☆10Jan 21, 2025Updated last year
- Feature Selection in scRNA-seq☆11Sep 9, 2021Updated 5 years ago
- Local Spatial Gradient Inference☆12Jul 28, 2025Updated last year
- Aditive manufacturing framework☆12May 26, 2023Updated 3 years ago
- ☆10Sep 2, 2024Updated 2 years ago
- R package for CS-CORE, a statistical method for cell-type-specific co-expression inference from single cell RNA-sequencing data☆31May 4, 2026Updated 5 months ago
- Detecting and dissecting anomalous anatomic regions in spatial transcriptomics with STANDS☆11May 18, 2026Updated 5 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- R implementation of the Reshef and Rumker CNA method (https://github.com/immunogenomics/cna)☆16Aug 10, 2026Updated 2 months ago
- Spatial Omics Structure Analysis (sosta)☆10Sep 18, 2026Updated last month
- Single cell STEM (scSTEM) is a shiny app based R package for visualizing and clustering genes in pseudotime ordered single cell RNA-seq d…☆21Jul 7, 2022Updated 4 years ago
- A collection of useful functions for bioinformatics data analysis☆26Mar 19, 2026Updated 7 months ago
- R package for analysing meaningful differences in the numbers of cell populations from single-cell phenotypic data☆25Oct 13, 2026Updated 2 weeks ago
- Spatially-aware quality control for spatial transcriptomics☆17Oct 16, 2026Updated 2 weeks ago
- A classifier for tumor microenvironment subtype based on ensemble machine learning models☆11Jul 20, 2025Updated last year