DavisLaboratory / scDECAF
Querying cellular states and programs by learning representations of gene sets
☆12Updated 10 months ago
Alternatives and similar repositories for scDECAF:
Users that are interested in scDECAF are comparing it to the libraries listed below
- Mosaic single cell data integration using non-overlapping features☆37Updated 2 years ago
- Flexible, probablistic metrics for quality control of scRNA-seq data☆20Updated 2 years ago
- Supplementary information for "Population-level comparisons of gene regulatory networks modeled on high-throughput single-cell transcript…☆9Updated last year
- An R wrapper for too-many-cells, for clustering single cells and analyzing cell clade relationships with colorful visualizations.☆25Updated 5 years ago
- Cell-type Relationship Analysis Workflow Done Across Distances☆31Updated 2 months ago
- An R package for visualising cell-cell interactions☆44Updated 8 months ago
- This repository contains HCA Benchmarking codes☆26Updated 5 years ago
- Code used for muti cellular factor analysis☆13Updated last year
- Human brain, >200,000 nuclei☆24Updated 3 years ago
- Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.☆36Updated last month
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆42Updated last year
- R implementation of the Reshef and Rumker CNA method (https://github.com/immunogenomics/cna)☆15Updated last year
- R package for detection of cell-cell interaction using Non-negative Tensor Decomposition☆34Updated 2 years ago
- Single-cell analysis with non-negative matrix factorization☆44Updated 6 months ago
- A database of useful gene signatures for single-cell analysis☆21Updated last year
- Cluster Identity Predictor (R package implementation)☆20Updated 3 years ago
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆25Updated last year
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 6 months ago
- ☆29Updated 2 years ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆25Updated 3 years ago
- Automated ingestion and conversion of various single-cell data formats, within and across species☆11Updated last month
- Collection of useful methods for single cell analysis☆14Updated 8 months ago
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 3 years ago
- R package for Flexible dot plots☆29Updated 2 years ago
- Code related to scRNA analysis using the scAmpi workflow☆25Updated 6 months ago
- Repository for scRNAseq study of human kidneys☆15Updated 5 years ago
- Tool for IDentification and Enumeration of Spliced and Unspliced Read Fragments☆10Updated last month
- ☆25Updated 3 years ago
- ANS_signature_scoring: A gene expression signature scoring Python package.☆15Updated 3 weeks ago
- Gene Expression Decomposition and Integration☆17Updated 2 months ago