tanlabcode / CytoCommunity
The first computational tool that enables both unsupervised and supervised discovery of tissue spatial domains
☆26Updated 11 months ago
Alternatives and similar repositories for CytoCommunity:
Users that are interested in CytoCommunity are comparing it to the libraries listed below
- ☆13Updated last year
- spSeudoMap: cell type mapping of spatial transcriptomics using unmatched single-cell RNA-seq data☆11Updated 4 months ago
- Spatial direct messaging detected by bivariate Moran☆25Updated last month
- SPatial INtegration of spatially resolved transcriptomics datasets☆13Updated 5 months ago
- CAST package☆29Updated 3 months ago
- CeLEry: cell location recovery in single-cell RNA sequencing☆33Updated this week
- Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data☆33Updated 7 months ago
- sEV-containing droplet identification in scRNA-seq data (SEVtras)☆24Updated last month
- Bayesian Analytics for Spatial Segmentation☆23Updated 4 months ago
- Data processing and analysis workflow for GAGE-seq, a coassay of single-cell HiC and single-cell RNA-seq☆11Updated 10 months ago
- ☆16Updated 3 weeks ago
- ☆18Updated 3 weeks ago
- Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics☆30Updated last week
- ☆44Updated 9 months ago
- Publically accessible code for DIISCO method☆10Updated 3 months ago
- ☆18Updated last year
- ☆10Updated 8 months ago
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆23Updated last year
- UniTVelo, Temporally Unified RNA Velocity for single cell trajectory inference☆26Updated 3 months ago
- Spatial transcriptomics of heart tissue☆20Updated 2 years ago
- Spatial Cellular Estimator for Tumors☆47Updated last week
- Deciphering driver regulators of cell fate decisions from single-cell RNA-seq data☆22Updated 3 months ago
- ☆12Updated 2 years ago
- Data available at: https://www.dropbox.com/sh/jh4s57kgbb0rnxe/AABoMK466cGc1OKsOuFN10wca?dl=0 and https://nyulangone-my.sharepoint.com//g/…☆28Updated 2 years ago
- ☆31Updated last year
- ☆46Updated last year
- ☆20Updated last year
- ☆37Updated 2 years ago
- code and dataset for spatialDWLS☆12Updated 3 years ago
- ☆12Updated 2 years ago