tanlabcode / CytoCommunity
The first computational tool that enables both unsupervised and supervised discovery of tissue spatial domains
☆22Updated 6 months ago
Related projects: ⓘ
- ☆13Updated this week
- ☆35Updated last month
- ☆12Updated 10 months ago
- SPatial INtegration of spatially resolved transcriptomics datasets☆13Updated last week
- CeLEry: cell location recovery in single-cell RNA sequencing☆26Updated 4 months ago
- Python package to find communication-driven intercellular flows from single-cell RNA-sequencing and spatial transcriptomics data.☆39Updated this week
- Bayesian Analytics for Spatial Segmentation☆19Updated last year
- NicheDE is a method that detects context dependent changes in gene expression in spatial transcriptomic data.☆14Updated 4 months ago
- A package for the analysis of Imaging Mass Cytometry data☆12Updated 9 months ago
- Spatial Cellular Estimator for Tumors☆40Updated last month
- ☆44Updated last year
- Spatial Transcriptomics Algorithm Reconstructing Copy-number Heterogeneity☆18Updated last month
- ☆26Updated 8 months ago
- ☆20Updated last month
- Spatial direct messaging detected by bivariate Moran☆24Updated 4 months ago
- ☆14Updated 2 months ago
- Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics☆23Updated 3 months ago
- Data available at: https://www.dropbox.com/sh/jh4s57kgbb0rnxe/AABoMK466cGc1OKsOuFN10wca?dl=0 and https://nyulangone-my.sharepoint.com//g/…☆24Updated 2 years ago
- ☆17Updated last year
- Deciphering tumor ecosystems at super-resolution from spatial transcriptomics with TESLA☆41Updated 6 months ago
- Data processing and analysis workflow for GAGE-seq, a coassay of single-cell HiC and single-cell RNA-seq☆11Updated 5 months ago
- UniTVelo, Temporally Unified RNA Velocity for single cell trajectory inference☆25Updated last year
- ☆26Updated 8 months ago
- Unsupervised Inference of Developmental Directions for Single Cells☆20Updated 8 months ago
- Evaluation of cell-cell interaction methods by integrating single-cell RNA sequencing data with spatial information☆20Updated last year
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆36Updated 2 months ago
- spatialDLPFC project involving Visium (n = 30), Visium SPG (n = 4) and snRNA-seq (n = 19) samples☆16Updated 3 months ago
- An R package for handling and analysing imaging mass cytometry data☆20Updated 2 months ago
- Probabilistic Alignment of Spatial Transcriptomics Experiments v.2☆28Updated 8 months ago
- Code for a multimodal atlas of healthy and injured cell states and niches in the human kidney☆14Updated 6 months ago