tanlabcode / CytoCommunityLinks
The first computational tool that enables both unsupervised and supervised discovery of tissue spatial domains
☆29Updated last month
Alternatives and similar repositories for CytoCommunity
Users that are interested in CytoCommunity are comparing it to the libraries listed below
Sorting:
- ☆48Updated last week
- Spatial direct messaging detected by bivariate Moran☆26Updated last month
- CAST package☆38Updated 7 months ago
- ☆29Updated 3 months ago
- ☆18Updated last week
- Bayesian Analytics for Spatial Segmentation☆28Updated 3 weeks ago
- Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data☆35Updated 10 months ago
- Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics☆35Updated 3 months ago
- Probabilistic Alignment of Spatial Transcriptomics Experiments v.2☆34Updated 2 months ago
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆35Updated 3 weeks ago
- ☆35Updated last week
- ☆27Updated 3 months ago
- CeLEry: cell location recovery in single-cell RNA sequencing☆35Updated 3 months ago
- ☆37Updated 2 years ago
- GASTON: deep learning algorithm learns "topography" of a tissue slice from spatial transcriptomics data☆53Updated 4 months ago
- ☆13Updated last year
- domain adaptation of spatial and single-cell transcriptome☆27Updated 8 months ago
- ☆11Updated last year
- Perturbation-response Score (PS) analysis is a method to quantify diverse perturbation responses and discover novel biological insights i…☆14Updated last year
- Adversarial domain translation networks for integrating large-scale atlas-level single-cell datasets☆30Updated last year
- MARIO: single-cell proteomic data matching and integration using both shared and distinct features☆23Updated last year
- Code for the spatial transcriptomic paper on IPF lungs☆17Updated 10 months ago
- Data processing and analysis workflow for GAGE-seq, a coassay of single-cell HiC and single-cell RNA-seq☆13Updated last year
- Spatial Transcriptomics Algorithm Reconstructing Copy-number Heterogeneity☆27Updated 10 months ago
- CellLENS: Cross-domain information fusion for enhanced cell population delineation in single-cell spatial-omics data☆20Updated this week
- Spatial Cellular Estimator for Tumors☆52Updated last week
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆27Updated last year
- Evaluation of cell-cell interaction methods by integrating single-cell RNA sequencing data with spatial information☆21Updated 2 years ago
- Code used to benchmark Xenium☆58Updated 11 months ago
- scTM: A package for topic modelling in transcriptomics data☆20Updated last year