Alternatives and similar repositories for CytoCommunity

Users that are interested in CytoCommunity are comparing it to the libraries listed below

• LiHongCSBLab / SOAPy
  ☆31Updated 9 months ago
• zhengli09 / BASS
  Bayesian Analytics for Spatial Segmentation
  ☆30Updated 7 months ago
• dpeerlab / ENVI
  ☆50Updated last month
• YingMa0107 / IRIS
  Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics
  ☆41Updated 10 months ago
• QihuangZhang / CeLEry
  CeLEry: cell location recovery in single-cell RNA sequencing
  ☆35Updated 9 months ago
• StatBiomed / SpatialDM
  Spatial direct messaging detected by bivariate Moran
  ☆31Updated 4 months ago
• tabdelaal / SpaGE
  Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data
  ☆39Updated last year
• raphael-group / GASTON
  GASTON: deep learning algorithm learns "topography" of a tissue slice from spatial transcriptomics data
  ☆66Updated 5 months ago
• Banovich-Lab / Spatial_PF
  ☆32Updated last month
• wanglab-broad / CAST
  CAST package
  ☆41Updated last year
• welch-lab / cytosignal
  ☆20Updated 5 months ago
• TencentAILabHealthcare / spatialID
  ☆40Updated 3 years ago
• QuKunLab / SPACEL
  ☆60Updated last year
• raphael-group / STARCH
  Spatial Transcriptomics Algorithm Reconstructing Copy-number Heterogeneity
  ☆28Updated last year
• Xinyiw28 / CrossChat
  Detect hierarchical structures in cell-cell communications
  ☆16Updated 10 months ago
• data2intelligence / SpaCET
  Spatial Cellular Estimator for Tumors
  ☆60Updated 2 weeks ago
• Moldia / Xenium_benchmarking
  Code used to benchmark Xenium
  ☆71Updated last year
• GuangyuWangLab2021 / Thor
  Cell level integrated analysis of tissue histology and spatial transcriptomics
  ☆26Updated last month
• raphael-group / CalicoST
  Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics
  ☆43Updated 3 months ago
• raphael-group / paste2
  Probabilistic Alignment of Spatial Transcriptomics Experiments v.2
  ☆41Updated 9 months ago
• yunguan-wang / Spacia
  ☆30Updated 7 months ago
• Patchouli-M / SequencingCancerFinder
  ☆41Updated 6 months ago
• seqscope / ficture
  ☆41Updated last month
• kharchenkolab / scITD
  Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition
  ☆62Updated last year
• YiLab-SC / scHolography
  ☆11Updated last year
• bsungwoo / spSeudoMap
  spSeudoMap: cell type mapping of spatial transcriptomics using unmatched single-cell RNA-seq data
  ☆13Updated last year
• 10XGenomics / janesick_nature_comms_2023_companion
  Code companion to the publication "High resolution mapping of the breast cancer tumor microenvironment using integrated single cell, spat…
  ☆28Updated 2 years ago
• mexchy1000 / CellDART
  domain adaptation of spatial and single-cell transcriptome
  ☆28Updated last year
• leihouyeung / STdeconv_benchmark
  The benchmarking of spatial transcriptomics deconvolution methods
  ☆33Updated 2 years ago
• JinmiaoChenLab / scTM
  scTM: A package for topic modelling in transcriptomics data
  ☆24Updated last year