YosefLab / Compass
In-Silico Modeling of Metabolic Heterogeneity using Single-Cell Transcriptomes
☆102Updated last week
Alternatives and similar repositories for Compass:
Users that are interested in Compass are comparing it to the libraries listed below
- Direct estimation of mean and covariance from single cell RNA seq experiments☆95Updated this week
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆92Updated last year
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆133Updated this week
- A tool for semi-automatic cell type harmonization and integration☆100Updated 11 months ago
- Significance analysis for clustering single-cell RNA-sequencing data☆108Updated 4 months ago
- Tutorial of single-cell RNA-ATAC multiomic sequencing data analysis☆50Updated 8 months ago
- Efficient and precise single-cell reference atlas mapping with Symphony☆100Updated last year
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆119Updated 8 months ago
- A python-based package and software to predict metabolite mediated cell-cell communications by single-cell RNA-seq data☆71Updated 2 months ago
- Pipeline for exploring metebolic heterogeneity at single-cell resolution☆73Updated 4 years ago
- Single-cell disease relevance score (scDRS)☆119Updated 3 months ago
- ☆113Updated 2 years ago
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆153Updated 6 months ago
- CytoTRACE 2 is an interpretable AI method for predicting cellular potency and absolute developmental potential from scRNA-seq data.☆111Updated this week
- Single-nuclei RNA-seq and ATAC-seq in Alzheimer's disease☆89Updated 3 years ago
- Analysis of cell-cell communication at single-cell resolution☆100Updated 4 months ago
- Methods to discover gene programs on single-cell data☆96Updated last month
- Methods to compute Local Inverse Simpson's Index (LISI)☆60Updated 3 years ago
- single cell Flux Estimation Analysis (scFEA) Try the below web server!☆109Updated last year
- trajectory inference☆94Updated 3 months ago
- ☆104Updated 11 months ago
- Quantifying metabolism activity at the single-cell resolution☆125Updated 5 months ago
- scDIOR: Single cell data IO softwaRe☆139Updated 2 years ago
- ☆65Updated this week
- ST Pipeline contains the tools and scripts needed to process and analyze the raw files generated with the Spatial Transcriptomics method …☆70Updated this week
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆93Updated last year
- ☆96Updated 4 years ago
- The integration of single cell rank-based gene set enrichment analysis☆116Updated 5 months ago
- Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods☆89Updated last year
- Single-Cell Clustering Assessment Framework☆97Updated last year