YosefLab / Compass
In-Silico Modeling of Metabolic Heterogeneity using Single-Cell Transcriptomes
☆106Updated 3 months ago
Alternatives and similar repositories for Compass:
Users that are interested in Compass are comparing it to the libraries listed below
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆144Updated 3 months ago
- Direct estimation of mean and covariance from single cell RNA seq experiments☆106Updated 3 months ago
- Efficient and precise single-cell reference atlas mapping with Symphony☆104Updated 2 years ago
- Significance analysis for clustering single-cell RNA-sequencing data☆115Updated 7 months ago
- Methods to discover gene programs on single-cell data☆114Updated last week
- Tutorial of single-cell RNA-ATAC multiomic sequencing data analysis☆55Updated last year
- Single-nuclei RNA-seq and ATAC-seq in Alzheimer's disease☆93Updated 3 years ago
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆158Updated last month
- ☆118Updated 3 years ago
- single cell Flux Estimation Analysis (scFEA) Try the below web server!☆119Updated last year
- Single-cell disease relevance score (scDRS)☆127Updated 6 months ago
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆102Updated last week
- A tool for semi-automatic cell type harmonization and integration☆104Updated last month
- marker-based purification of cell types from single-cell RNA-seq datasets☆110Updated last week
- ☆105Updated last month
- trajectory inference☆97Updated 3 months ago
- Quantifying metabolism activity at the single-cell resolution☆133Updated 8 months ago
- Spatial transcriptomics of heart tissue☆84Updated last year
- A Bayesian model for compositional single-cell data analysis☆163Updated 2 years ago
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆126Updated 2 months ago
- R package for pathway analysis in scRNA-seq data☆73Updated 8 months ago
- Pipeline for exploring metebolic heterogeneity at single-cell resolution☆74Updated 5 years ago
- The integration of single cell rank-based gene set enrichment analysis☆123Updated 9 months ago
- scDIOR: Single cell data IO softwaRe☆139Updated 3 years ago
- Code for reproducing the analysis in Gavish et al. "The transcriptional hallmarks of intra-tumor heterogeneity across a thousand tumors".☆103Updated 7 months ago
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆94Updated last year
- ST Pipeline contains the tools and scripts needed to process and analyze the raw files generated with the Spatial Transcriptomics method …☆80Updated 2 months ago
- Single Cell Cluster Evaluation☆94Updated 3 years ago
- This repository contains the code used to generate figures and perform analysis for the manuscript titled "Transcriptomic and Spatial Pro…☆77Updated 6 months ago
- CytoTRACE 2 is an interpretable AI method for predicting cellular potency and absolute developmental potential from scRNA-seq data.☆141Updated last month