aertslab / scenicplusLinks
SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) and single-cell chromatin accessibility (scATAC-seq) data.
☆231Updated 6 months ago
Alternatives and similar repositories for scenicplus
Users that are interested in scenicplus are comparing it to the libraries listed below
Sorting:
- A tool for detecting somatic variants in single cell data☆211Updated 10 months ago
- A scalable SCENIC workflow for single-cell gene regulatory network analysis☆162Updated 2 years ago
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆150Updated 6 months ago
- Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data☆230Updated 2 years ago
- Single-cell epigenomics analysis tools☆278Updated 3 weeks ago
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆165Updated 4 months ago
- Infer copy number variation (CNV) from scRNA-seq data. Plays nicely with Scanpy.☆163Updated this week
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆289Updated 2 years ago
- CytoTRACE 2 is an interpretable AI method for predicting cellular potency and absolute developmental potential from scRNA-seq data.☆157Updated 4 months ago
- A guide to using a Seurat object in conjunction with RNA Velocity☆139Updated 3 years ago
- ☆247Updated last year
- scDIOR: Single cell data IO softwaRe☆144Updated 3 years ago
- scATAC-seq data analysis tools and papers☆112Updated last month
- Clustering scRNAseq by genotypes☆187Updated 8 months ago
- reticulate-free single cell format conversion☆178Updated last week
- An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.☆165Updated last year
- EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.☆208Updated last year
- ☆173Updated 3 months ago
- CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.☆345Updated last week
- Scissor package☆230Updated last year
- A Bayesian model for compositional single-cell data analysis☆172Updated 2 years ago
- Detect doublets in single-cell RNA-seq data☆155Updated 4 years ago
- LIANA: a LIgand-receptor ANalysis frAmework☆212Updated 11 months ago
- A package to help convert different single-cell data formats to each other☆434Updated last year
- LIANA+: an all-in-one framework for cell-cell communication☆223Updated 3 weeks ago
- single cell Flux Estimation Analysis (scFEA) Try the below web server!☆126Updated last year
- ☆271Updated 8 months ago
- Benchmarking computational single cell ATAC-seq methods☆184Updated 4 years ago
- Methods for detecting doublets in single-cell sequencing data☆203Updated 2 weeks ago
- ☆123Updated last year